PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco001167.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

bZIP

Protein Properties

Length: 388aa MW: 43647.5 Da PI: 6.9121

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco001167.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32	2.6e-10	98	139	3	41
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 + k +rr+++NReAAr+sR+RKka++++Le k ++Le+e Aco001167.1 98 SEKIQRRLAQNREAARKSRLRKKAYVQQLESsriKLAQLEQE 139 56889************************9722244555544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.5E-8	91	145	No hit	No description
SMART	SM00338	1.7E-7	96	159	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.289	98	142	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.7E-7	100	136	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.3E-7	100	143	No hit	No description
CDD	cd14708	1.25E-20	100	152	No hit	No description
PROSITE pattern	PS00036	0	103	118	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.4E-31	187	261	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MMELYPGYLE EHFHHLNPSS NSMTTASTQF VTSRRMGIYE PNHQMSMWDE SFKAESSQNT 60 SASTVLEADA KLDNKLLDVP HETFGPSKKY DQEANKPSEK IQRRLAQNRE AARKSRLRKK 120 AYVQQLESSR IKLAQLEQEL ERARQQGVYI AGHLGESTLG LTGAVDSGIA AFKMEYDHWV 180 AEQCRQTCEL RAALQAHVSD IELRMLVESG MSHYNNLFQI KAIAAKSDVF YLMSGMWKTA 240 AERFFLWIGG FRPSELLKVL SPHLDTLTEQ QVSAVCSLQH SSEQAEDALS QGLDKLQQTL 300 AETLTSYPLG ASDVGNYMEQ MANAMGKLEA LVSFVKQADL LRQQTLQQMC TILTTRQAVR 360 GLLALGDYFQ RLRTLSSLWA ARPREPA*

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MMELYPGYLE EHFHHLNPSS NSMTTASTQF VTSRRMGIYE PNHQMSMWDE SFKAESSQNT  60
SASTVLEADA KLDNKLLDVP HETFGPSKKY DQEANKPSEK IQRRLAQNRE AARKSRLRKK  120
AYVQQLESSR IKLAQLEQEL ERARQQGVYI AGHLGESTLG LTGAVDSGIA AFKMEYDHWV  180
AEQCRQTCEL RAALQAHVSD IELRMLVESG MSHYNNLFQI KAIAAKSDVF YLMSGMWKTA  240
AERFFLWIGG FRPSELLKVL SPHLDTLTEQ QVSAVCSLQH SSEQAEDALS QGLDKLQQTL  300
AETLTSYPLG ASDVGNYMEQ MANAMGKLEA LVSFVKQADL LRQQTLQQMC TILTTRQAVR  360
GLLALGDYFQ RLRTLSSLWA ARPREPA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00586	DAP	Transfer from AT5G65210	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020082894.1	0.0	transcription factor TGA4 isoform X1
Swissprot	A0A0P0WFC8	1e-163	TGAL6_ORYSJ; Transcription factor TGAL6
TrEMBL	A0A199V5P0	0.0	A0A199V5P0_ANACO; Transcription factor TGA1
STRING	XP_008801018.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3571	38	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-151	bZIP family protein

Link Out ? help Back to Top
Phytozome	Aco001167.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Okada A, et al. OsTGAP1, a bZIP transcription factor, coordinately regulates the inductive production of diterpenoid phytoalexins in rice. J. Biol. Chem., 2009. 284(39): p. 26510-8 [PMID:19635799] Okada K The biosynthesis of isoprenoids and the mechanisms regulating it in plants. Biosci. Biotechnol. Biochem., 2011. 75(7): p. 1219-25 [PMID:21737944] Yamane H Biosynthesis of phytoalexins and regulatory mechanisms of it in rice. Biosci. Biotechnol. Biochem., 2013. 77(6): p. 1141-8 [PMID:23748776] Miyamoto K, et al. Identification of target genes of the bZIP transcription factor OsTGAP1, whose overexpression causes elicitor-induced hyperaccumulation of diterpenoid phytoalexins in rice cells. PLoS ONE, 2014. 9(8): p. e105823 [PMID:25157897] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]