PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco001113.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

MYB

Protein Properties

Length: 328aa MW: 35959.1 Da PI: 6.7794

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco001113.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.3	3.2e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ lv +++++G+g+W+++++ g+ R+ k+c++rw +yl Aco001113.1 14 KGPWTPEEDLMLVSYIQEHGPGNWRSVPANTGLMRCSKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	50.7	4.3e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E++l++++ ++lG++ W++Ia++++ Rt++++k++w+++l Aco001113.1 67 RGNFTDQEEKLIIHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.1E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.236	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	2.68E-30	11	108	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	3.5E-16	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	6.40E-12	16	61	No hit	No description
PROSITE profile	PS51294	24.887	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-24	65	117	IPR009057	Homeodomain-like
SMART	SM00717	2.5E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	4.2E-15	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	1.39E-11	69	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MGRPPCCDKI GVKKGPWTPE EDLMLVSYIQ EHGPGNWRSV PANTGLMRCS KSCRLRWTNY 60 LRPGIKRGNF TDQEEKLIIH LQALLGNRWA AIASYLPERT DNDIKNYWNT HLKKKLKKLQ 120 NNEDGAPTSG SATNYQPISK GQWERRLQTD IHMARQALRE ALSIESKPTD LKPSNSLCSY 180 IKPGHLPTAS STTTYASNTE NISRLLQGWM RNSTKPKPTQ TDSGSSQNSI NKAVGAADSV 240 SSEGSASVVN NFESLLNFES QTPEGSGSGS GSGSGSETSL FQDECKPGSD QGQVPLSMIE 300 TWLFDESVGH GEVGFIDMTL DDPTELF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	3e-26	14	116	4	105	C-Myb DNA-Binding Domain
1msf_C	3e-26	14	116	4	105	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020107909.1	0.0	myb-related protein 306-like
Swissprot	P81392	1e-111	MYB06_ANTMA; Myb-related protein 306
TrEMBL	A0A199V188	0.0	A0A199V188_ANACO; Myb-related protein 306
STRING	XP_010258354.1	1e-140	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP229	38	296

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62470.2	2e-95	myb domain protein 96

Link Out ? help Back to Top
Phytozome	Aco001113.1

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]