PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco000296.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

C3H

Protein Properties

Length: 708aa MW: 75411.8 Da PI: 6.5051

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco000296.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.4e-07	321	341	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Aco000296.1 321 PCPDFRK-GSCRRGDMCEYAHG 341 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48403	5.6E-13	68	153	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.18	73	103	IPR002110	Ankyrin repeat
PROSITE profile	PS50297	14.079	73	153	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	9.76E-6	73	133	No hit	No description
Pfam	PF12796	1.3E-7	73	141	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	2.0E-14	74	153	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	9.458	108	143	IPR002110	Ankyrin repeat
SMART	SM00248	0.2	108	140	IPR002110	Ankyrin repeat
SMART	SM00356	5.7E-6	316	342	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.1E-4	320	343	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.7E-5	321	341	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.788	321	343	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 708 aa Download sequence Send to blast
MTGGCNNMKN HFQNLTIETG ADAEADAVAG LLEFAADNDA AGLRRAIEED PAAADEVGLW 60 YGRRKGSNLM VLEHRTPLMV AATYGSLDAI ALLVSLPSVD VNRRCGPDAA TALHCAASGA 120 SECALDAVRL LLDAGANPAA ADAAGLRPAD VAVAPPMSPA DVKIALLRLL GGDCRGESNH 180 HHPHHHAALR VMTARSPNSN SPPLSSSPDE NGGSPSSDST SSSPVMNSNS AKAASSQDGA 240 GAGAVAAAAA VVSEKKEYPI DPTLPDIKNS IYATDEFRMF SFKVRPCSRA YSHDWTECPF 300 VHPGENARRR DPRKYHYSCV PCPDFRKGSC RRGDMCEYAH GVFECWLHPA QYRTRLCKDA 360 GLPVLTLGGH VALHAAHVAS NAPALHLPGS NLQLSRLRTS LSARDXGAPP ALRVHRLRGA 420 VPALRQLGGR AGDGCGDGDD DDLSMLPDFD AQLLNDLCYS HLSSPAANRS VRSKTLTPSN 480 LDDLFSAEIA ASSPRYNSDQ APFSPTHKTV MFNQFQQQQQ SLLSPINTGI FPPKTSSFGI 540 SSPGLMSPRS MEQPVSPMGS RMAALAQREK QQQQQQQQQQ QTLRSLSSRD LGSGTSLFVG 600 SPVNSSPWAK WGSPSGAPDW NVNGEELGRL RRSSSFELRS NGEEPDLSWV QSLVKESPQE 660 KLLGTASSEG VSNSNLNSNS NSQMEGHDQA AVLGAWLEQM QLDQMTT*

Sequence ? help Back to Top

Protein Sequence Length: 708 aa Download sequence Send to blast

MTGGCNNMKN HFQNLTIETG ADAEADAVAG LLEFAADNDA AGLRRAIEED PAAADEVGLW  60
YGRRKGSNLM VLEHRTPLMV AATYGSLDAI ALLVSLPSVD VNRRCGPDAA TALHCAASGA  120
SECALDAVRL LLDAGANPAA ADAAGLRPAD VAVAPPMSPA DVKIALLRLL GGDCRGESNH  180
HHPHHHAALR VMTARSPNSN SPPLSSSPDE NGGSPSSDST SSSPVMNSNS AKAASSQDGA  240
GAGAVAAAAA VVSEKKEYPI DPTLPDIKNS IYATDEFRMF SFKVRPCSRA YSHDWTECPF  300
VHPGENARRR DPRKYHYSCV PCPDFRKGSC RRGDMCEYAH GVFECWLHPA QYRTRLCKDA  360
GLPVLTLGGH VALHAAHVAS NAPALHLPGS NLQLSRLRTS LSARDXGAPP ALRVHRLRGA  420
VPALRQLGGR AGDGCGDGDD DDLSMLPDFD AQLLNDLCYS HLSSPAANRS VRSKTLTPSN  480
LDDLFSAEIA ASSPRYNSDQ APFSPTHKTV MFNQFQQQQQ SLLSPINTGI FPPKTSSFGI  540
SSPGLMSPRS MEQPVSPMGS RMAALAQREK QQQQQQQQQQ QTLRSLSSRD LGSGTSLFVG  600
SPVNSSPWAK WGSPSGAPDW NVNGEELGRL RRSSSFELRS NGEEPDLSWV QSLVKESPQE  660
KLLGTASSEG VSNSNLNSNS NSQMEGHDQA AVLGAWLEQM QLDQMTT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC130598	1e-65	AC130598.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0056I11, complete sequence.
GenBank	AK099898	1e-65	AK099898.1 Oryza sativa Japonica Group cDNA clone:J013114A13, full insert sequence.
GenBank	AK105767	1e-65	AK105767.1 Oryza sativa Japonica Group cDNA clone:001-202-E04, full insert sequence.
GenBank	AK364940	1e-65	AK364940.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2029J17.
GenBank	AP014961	1e-65	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBank	EU847522	1e-65	EU847522.1 Oryza sativa Japonica Group clone OsLS310 zinc finger protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010909716.1	0.0	zinc finger CCCH domain-containing protein 24
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A444DUB9	0.0	A0A444DUB9_ENSVE; Uncharacterized protein
STRING	VIT_13s0064g00920.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP823	37	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	3e-72	CCCH-type zinc finger protein with ARM repeat domain

Link Out ? help Back to Top
Phytozome	Aco000296.1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]