PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Achn390691 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 384aa MW: 42678.8 Da PI: 8.3707 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.6 | 0.0002 | 313 | 335 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C+++F++ L H r+H Achn390691 313 HECPICHRVFKSGQALGGHKRSH 335 79******************999 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.40.10 | 0.001 | 54 | 92 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SMART | SM00355 | 0.12 | 63 | 85 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.078 | 63 | 90 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.2E-7 | 64 | 85 | No hit | No description |
Pfam | PF13912 | 5.2E-7 | 64 | 87 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 65 | 85 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.2E-7 | 308 | 335 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 0.001 | 309 | 324 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SMART | SM00355 | 0.024 | 313 | 335 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.1E-11 | 313 | 335 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.328 | 313 | 335 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 315 | 335 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 384 aa Download sequence Send to blast |
MRTHGTSNSS ESDENFEPNV IKISSLKDFS RFELGGQSGY GLRENPKKTW RLVNPKVNSK 60 QDQICKQCGK GFQSLKALCG HMACHSETDR VLKDDHSWTS ENDSDNEAEA PRRSKRAASM 120 RYKRVVVRSS CFGSPVSEVD HEQEEVAMCL MMLSRDCGNW VGVNSVVAES SDNNSVVLET 180 KSSSIDMRNI GGLNCVYNGD ESVGIRKLGK GKLKPVDLEN SDCGHFVNGA KKVDSDVSVY 240 GFLTNDSFKK QKLEGGFRFK AFDSEFGTAF SKVKCRGADG LGKRSKYEFG GKKKKDLNCN 300 GERRPKSKKS KGHECPICHR VFKSGQALGG HKRSHFLGAS EEKINQTPIR KQEFSETQDL 360 IDLNLPAPEE EEEANEHSQI MPW* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028122442.1 | 1e-152 | zinc finger protein ZAT4-like | ||||
TrEMBL | A0A2R6PCA5 | 0.0 | A0A2R6PCA5_ACTCH; Zinc finger protein | ||||
STRING | VIT_01s0011g00710.t01 | 5e-80 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1343 | 22 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G26610.1 | 9e-60 | C2H2-like zinc finger protein |