PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn390691
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 384aa    MW: 42678.8 Da    PI: 8.3707
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn390691genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002313335123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp+C+++F++   L  H r+H
  Achn390691 313 HECPICHRVFKSGQALGGHKRSH 335
                 79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.100.0015492IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM003550.126385IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.0786390IPR007087Zinc finger, C2H2
SuperFamilySSF576671.2E-76485No hitNo description
PfamPF139125.2E-76487IPR007087Zinc finger, C2H2
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
SuperFamilySSF576671.2E-7308335No hitNo description
Gene3DG3DSA:3.30.40.100.001309324IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM003550.024313335IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-11313335IPR007087Zinc finger, C2H2
PROSITE profilePS501579.328313335IPR007087Zinc finger, C2H2
PROSITE patternPS000280315335IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MRTHGTSNSS ESDENFEPNV IKISSLKDFS RFELGGQSGY GLRENPKKTW RLVNPKVNSK  60
QDQICKQCGK GFQSLKALCG HMACHSETDR VLKDDHSWTS ENDSDNEAEA PRRSKRAASM  120
RYKRVVVRSS CFGSPVSEVD HEQEEVAMCL MMLSRDCGNW VGVNSVVAES SDNNSVVLET  180
KSSSIDMRNI GGLNCVYNGD ESVGIRKLGK GKLKPVDLEN SDCGHFVNGA KKVDSDVSVY  240
GFLTNDSFKK QKLEGGFRFK AFDSEFGTAF SKVKCRGADG LGKRSKYEFG GKKKKDLNCN  300
GERRPKSKKS KGHECPICHR VFKSGQALGG HKRSHFLGAS EEKINQTPIR KQEFSETQDL  360
IDLNLPAPEE EEEANEHSQI MPW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028122442.11e-152zinc finger protein ZAT4-like
TrEMBLA0A2R6PCA50.0A0A2R6PCA5_ACTCH; Zinc finger protein
STRINGVIT_01s0011g00710.t015e-80(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13432255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.19e-60C2H2-like zinc finger protein