PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn389601
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 266aa    MW: 30208.5 Da    PI: 4.3845
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn389601genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.14e-15701101656
                 HHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  16 eelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 e+ Fe+++++  e++++LAkk+gL  rqV vWFqNrRa++k
  Achn389601  70 EQSFEEENKLEPERKTQLAKKVGLLPRQVAVWFQNRRARWK 110
                 899*************************************9 PP
2HD-ZIP_I/II107.97.2e-3563147292
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  kkrrl+ eq      sFeee+kLeperK++la+++gl prqvavWFqnrRAR+ktkqlE++++ Lk++y++l +e ++++ke+e+L++e+ 
   Achn389601  63 KKRRLTPEQ------SFEEENKLEPERKTQLAKKVGLLPRQVAVWFQNRRARWKTKQLEREFDCLKSSYESLLSECDSIRKENEKLKAEVV 147
                  777777765......8***********************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.27E-1462114IPR009057Homeodomain-like
SMARTSM003892.6E-1063116IPR001356Homeobox domain
CDDcd000869.80E-1363113No hitNo description
Gene3DG3DSA:1.10.10.607.9E-1670112IPR009057Homeodomain-like
PROSITE profilePS5007114.26870112IPR001356Homeobox domain
PfamPF000463.2E-1270110IPR001356Homeobox domain
PRINTSPR000312.5E-58392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000312.5E-592108IPR000047Helix-turn-helix motif
PfamPF021832.6E-16112154IPR003106Leucine zipper, homeobox-associated
Gene3DG3DSA:1.20.5.1708.0E-4113147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MNSGRLFFDP SRYGNMFFGN CDPIFRGPRS VMGMEETIKR RPFLTSPDEV FDEEYYDEQS  60
PEKKRRLTPE QSFEEENKLE PERKTQLAKK VGLLPRQVAV WFQNRRARWK TKQLEREFDC  120
LKSSYESLLS ECDSIRKENE KLKAEVVSLT EKVQAKEVAG AKSDPVPEDA PILSPLQLNV  180
KAEDRLSSGS SGSAVVDEDG PQLMDSGDSY FLNDNYPGCM GPVDGLQSEE DDGSDDGRSF  240
FLCALAAEEQ QHHEEGEPLS WWVWS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018823115.11e-130PREDICTED: homeobox-leucine zipper protein HAT5
SwissprotQ022833e-81HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A2R6RK601e-175A0A2R6RK60_ACTCH; Homeobox-leucine zipper protein
STRINGEOY023591e-125(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA78912330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-79homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]