PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn388491
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 862aa    MW: 95622.8 Da    PI: 6.2596
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn388491genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.12.4e-06235255426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 ++C++f+  G C++ d+C+F+H+
  Achn388491 235 PPCKYFMM-GKCNR-DNCRFSHD 255
                 89******.*****.*******5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.652111142IPR000571Zinc finger, CCCH-type
SMARTSM003562.2120141IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.901182209IPR000571Zinc finger, CCCH-type
SMARTSM003566.2182208IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.544231257IPR000571Zinc finger, CCCH-type
SMARTSM003560.021231256IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 862 aa     Download sequence    Send to blast
MMSGSARKRK SMWDSKEKPQ LPVQIGEKDA WHQKESYSNR HVSHDSRLSD EEDFNELKSK  60
EFSVRSSWEP SRGNSTQKDN RGELNDIHET RKAGDGDKKY HTSLDSDGWG QQNQSRCPEN  120
SRDFTAGKCT RGSQCRLLHE DNINHRDGGR LEKERAERWR SLQEHGGNYY GGEKDEPQRN  180
SGKSTVLCND FLKGRSLGGS SCRYSHHDAT GDNSERSNRN SSDRDYQPPP RNGNPPCKYF  240
MMGKCNRDNC RFSHDGQARG YLEGKSQGDN WGNDSGDMNN SGNGPKWDEA TAVSIVEQST  300
GWGNVEKGTS NDPTITEKQI DYGRGHSLED NTKEWNGSTW ADATGVSESG NSTGWGSSKV  360
ENVNLSNWAN AEKHTDGGCD HSLDNASRMW GGPVGKDRDV ERHENESPHL GSGDDVVDMC  420
ITESEDVARS FGRESLLAPI GLQSQAPYGI SKDVHEQNIM QAAFPENSPI QQHHNKMGDD  480
NAIMDDLNSV TEVDVYGNAG HPCLVPGQMF NKNADSLGFR TQSVGGINQS QHKISINHSN  540
GHDIDLNGPA QQNNSPSNLH NQMQIQRGES VKTMVNCVMP QDDDNSEQAA QLTNFPASVM  600
QLFGNGQLPQ LYVALNPQNS VDSVRFLPHS ASLPPPITSM DARPDPATMS QKKYDPIADS  660
VELNKPGNCN QHPECLPDSV EQKNQTLSVR SSPSSAVGFD SGELPKNGDP DNNNRRSPDL  720
KQQKLVANLA LEENSKSIPE KRKQEQENIR AGIVDADPKI VDGTIGKDEK AMRLFKIALV  780
DFVKELLKPK WKEGQMSREV HKAIVKKVID KVTSTIQGAN IPKTQERIDQ YLAYSKPKLN  840
KLVEVSPSLA VYFYRHVTHF S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028062081.10.0zinc finger CCCH domain-containing protein 55-like isoform X2
TrEMBLA0A2R6R2K60.0A0A2R6R2K6_ACTCH; Zinc finger CCCH domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-17C3H family protein