PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn387241
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 440aa    MW: 51118.4 Da    PI: 6.5119
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn387241genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.22.6e-24112209186
    trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                 +Wt+++v++Li+a+++++e++ +++           +kk++W++vsk+m+erg  +sp+qC++k+++lnkryk+++e+ +++ +++++++   +d ++
  Achn387241 112 KWTDKMVRLLITAVSYIGEDVAAENsngtrrknanlQKKGKWKSVSKVMAERGHYVSPQQCEDKFNDLNKRYKRLNEILGRGiSCQVVERPEILDIMD 209
                 7**************999999976556778888999*********************************************98999999888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.0E-23110235No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MIPGGGSYGG IDLQGSMRVH HHQQHPLTLH QQHQSLPRQG LMVHPSIHEN FPLTMSSMQD  60
CDHSISLEDF PKGERGKNSA SDEDEPSFME DTIEGHSDVN RGKKGIPWQR VKWTDKMVRL  120
LITAVSYIGE DVAAENSNGT RRKNANLQKK GKWKSVSKVM AERGHYVSPQ QCEDKFNDLN  180
KRYKRLNEIL GRGISCQVVE RPEILDIMDH ISENRKDEVR KILSSKHLFY EEMCSYHNGN  240
RLHLPHDPEL QRSLRLALRS RDDHENNDVR RHPQDDLDED DQDAEIDDHD EFEENHALHE  300
DRKAIYGVHG GSAKRMKQCQ GYEDIGLGNS LNSLDCNKAL ISLPQNAQGD MNQALPEGEK  360
ANLFQEKWMK HRLLQLEEQK LQIQAQMLEL EQERFKWQRF CKKKDRELEM MRMENERMKL  420
ENERMALDLK RKEMGADHN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028090983.10.0uncharacterized protein LOC114291136
TrEMBLA0A2R6R2L30.0A0A2R6R2L3_ACTCH; Trihelix transcription factor GT-4 like
STRINGXP_006434454.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76001830
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-128sequence-specific DNA binding transcription factors