PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Achn385691 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 245aa MW: 27588.1 Da PI: 7.9101 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 25.1 | 4.8e-08 | 62 | 117 | 1 | 49 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpk 49 lp+G++F+P+d+el+ e+L++k+ ++ ++l+ +++ +i++++P++Lp Achn385691 62 LPAGVKFDPSDQELL-EHLEAKAWSDACKLHPlidefipTLQGEdGICYTHPERLPG 117 799************.99****999995543333333333444436*********94 PP | |||||||
2 | NAM | 36.7 | 1.2e-11 | 117 | 159 | 87 | 128 |
NAM 87 gkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 gk++++l+ +g+++g kk+Lv+y g+++k+ekt+Wvmh+y+l Achn385691 117 GKTRPILH-NGKVKGYKKILVLYtnYGKQKKPEKTNWVMHQYHL 159 899*****.999***********6658999************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.81E-26 | 57 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-8 | 63 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 9.766 | 117 | 178 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 245 aa Download sequence Send to blast |
MTWCSDCSDE PAIVRRSSHP SSIDNVTVVA GKPLCHRTKS CPSCGHQINC QEKTGIHDLP 60 NLPAGVKFDP SDQELLEHLE AKAWSDACKL HPLIDEFIPT LQGEDGICYT HPERLPGKTR 120 PILHNGKVKG YKKILVLYTN YGKQKKPEKT NWVMHQYHLG NNEDERDGEL VVSKVFYQTQ 180 PRQCGSITKE TSPKKSKGRT GHQSPQFNDH NTRVEYCNPS LISFDQHDCE RASSRPVIPN 240 FNVM* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028109188.1 | 1e-125 | NAC domain-containing protein 73-like | ||||
Swissprot | O49459 | 9e-82 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A2R6QXJ0 | 1e-174 | A0A2R6QXJ0_ACTCH; NAC domain-containing protein | ||||
STRING | VIT_12s0028g03050.t01 | 1e-104 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2875 | 24 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G28500.1 | 4e-84 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
---|---|---|---|
|