PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn383981 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | YABBY | ||||||||
Protein Properties | Length: 158aa MW: 17430 Da PI: 6.2235 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 80.6 | 4.7e-25 | 6 | 66 | 4 | 64 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshld 64 + ++eq+Cy+ CnfCn +lavsvP + lf +vtvrCGhCt+l svn+a a q+la +++ + Achn383981 6 DVAPEQLCYIPCNFCNIVLAVSVPCSNLFDIVTVRCGHCTNLWSVNMAAAFQTLAWQDDHQ 66 5789***********************************************9999988644 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.1E-26 | 8 | 67 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MSSYVDVAPE QLCYIPCNFC NIVLAVSVPC SNLFDIVTVR CGHCTNLWSV NMAAAFQTLA 60 WQDDHQAPSY GAPDCRIDFG SSRTPITNTS EGRAPNRRIR EAPNVQAFLN AQMKAFVIRE 120 IHNVELKNAL DLISYGIRLK TISLIFIVFV ASCLEDA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006450895.1 | 4e-48 | axial regulator YABBY 5 isoform X1 | ||||
Refseq | XP_006475868.1 | 4e-48 | axial regulator YABBY 5 isoform X1 | ||||
TrEMBL | A0A2R6QRV8 | 1e-67 | A0A2R6QRV8_ACTCH; Axial regulator YABBY like | ||||
STRING | XP_006475868.1 | 2e-47 | (Citrus sinensis) | ||||
STRING | XP_006450895.1 | 2e-47 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 6e-34 | YABBY family protein |