PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn378861

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

bHLH

Protein Properties

Length: 404aa MW: 44090 Da PI: 6.7953

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn378861	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14	9e-05	357	376	36	55
S-STCHHHHHHHHHHHHHHH CS HLH 36 kKlsKaeiLekAveYIksLq 55 + + a++L +Av+YIk+Lq Achn378861 357 RQTNTADMLDLAVDYIKDLQ 376 44899**************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	4.7E-7	334	392	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.09E-4	351	380	No hit	No description
SuperFamily	SSF47459	3.27E-5	356	390	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MYGVGGSQAI SRDSNLLFSP SFKHSDGEFL KSRDFIDSDL YQNQHNQHSS GLMRYRSAPS 60 SFFASLVDGG GCEGFLNHHE PSIHESESVF TRFESSNGSD DSETHDLQFA VKHETPEQNQ 120 NQNQYSGSDS GHVIYRSSLD HGDLANRSDS VSNITSNGLF KVANGSAMES PVEGKNLIRQ 180 SSSPAGLFKN LTVENGFAVM RDAGNFRVGN GTNGKASPTK RLNDHINFSS GPPTCSRFMP 240 QIGENGNESS SPENGHLGNG NSTNGIYVPS SQNDTGFTGL KRNRDGEESF SGFNAFESQN 300 WESRNYGTGL THHLSLPKTS AEMGAVEKFL QFQQDSVPCK IRAKRGFATH PRSIAERQTN 360 TADMLDLAVD YIKDLQKQVK TLSDTRAKCT CSSKQKQPSN RTV*

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MYGVGGSQAI SRDSNLLFSP SFKHSDGEFL KSRDFIDSDL YQNQHNQHSS GLMRYRSAPS  60
SFFASLVDGG GCEGFLNHHE PSIHESESVF TRFESSNGSD DSETHDLQFA VKHETPEQNQ  120
NQNQYSGSDS GHVIYRSSLD HGDLANRSDS VSNITSNGLF KVANGSAMES PVEGKNLIRQ  180
SSSPAGLFKN LTVENGFAVM RDAGNFRVGN GTNGKASPTK RLNDHINFSS GPPTCSRFMP  240
QIGENGNESS SPENGHLGNG NSTNGIYVPS SQNDTGFTGL KRNRDGEESF SGFNAFESQN  300
WESRNYGTGL THHLSLPKTS AEMGAVEKFL QFQQDSVPCK IRAKRGFATH PRSIAERQTN  360
TADMLDLAVD YIKDLQKQVK TLSDTRAKCT CSSKQKQPSN RTV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028058918.1	0.0	transcription factor bHLH130-like
TrEMBL	A0A2R6QKS9	0.0	A0A2R6QKS9_ACTCH; Transcription factor bHLH130 like
STRING	POPTR_0009s06910.1	1e-105	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4435	22	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	1e-48	bHLH family protein