PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn378701

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NF-YA

Protein Properties

Length: 272aa MW: 30320.7 Da PI: 8.3017

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn378701	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	106.1	3e-33	112	168	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rakle ekk+ +k rkpylheSRh+hA++R+Rg+gGrF Achn378701 112 EEPVYVNAKQYNGILRRRQTRAKLELEKKV-IKVRKPYLHESRHQHAMKRARGCGGRF 168 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	5.4E-38	110	171	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.918	111	171	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	8.4E-29	113	168	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.1E-23	114	136	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	116	136	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.1E-23	145	168	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MHDTWNDDYG LIDLPSVIVE VHENPHGYLR LCGHNVQEQQ HIKHVPSSTP PAIGEHVEPN 60 SQMELVGHSI VLTSYPYTES HYGGIMAYGA QVHPHLLGIH QTRMPLPLEM EEEPVYVNAK 120 QYNGILRRRQ TRAKLELEKK VIKVRKPYLH ESRHQHAMKR ARGCGGRFLN TKKLDNNSTN 180 PTSEKEPKSG TTVSTQSGNS SGSEYWPTNS NGNSDQYRHI SHASSHGNIN GHGLSSMHHF 240 QSTGGEGGDW FDQEKGRVFV NQAPRGAATS K*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-21	112	176	2	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028058629.1	1e-123	nuclear transcription factor Y subunit A-7-like isoform X2
Swissprot	Q9LXV5	6e-41	NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBL	A0A2R6QKR7	1e-178	A0A2R6QKR7_ACTCH; Nuclear transcription factor Y subunit A-1 like
STRING	VIT_13s0064g00860.t01	7e-91	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11232	20	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12840.4	8e-37	nuclear factor Y, subunit A1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Siriwardana CL, et al. NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T. PLoS Genet., 2016. 12(12): p. e1006496 [PMID:27977687] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]