PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn377931

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

WRKY

Protein Properties

Length: 361aa MW: 40092.4 Da PI: 8.9298

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn377931	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.7	1e-32	237	293	2	58
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+ver+ dp++v++tYeg+H+h Achn377931 237 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSTCNVKKRVERCLGDPSIVVTTYEGKHTH 293 8******************************************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.9E-34	221	296	IPR003657	WRKY domain
SuperFamily	SSF118290	1.96E-28	228	296	IPR003657	WRKY domain
PROSITE profile	PS50811	30.274	231	296	IPR003657	WRKY domain
SMART	SM00774	6.0E-39	236	295	IPR003657	WRKY domain
Pfam	PF03106	8.5E-26	237	293	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MKITLLTQAT KPTLKNLPQE LSIGKLSPAP YQQYEQRPQA GPIRRSISGQ GLSLWAYQGL 60 SPAQLSHLTC RGDVIGPQDF CPRSLSLSKI IQSMEWKAAV KIEDPIRSTP FTDHFPLSDL 120 LDGEKSSLGF MELLGIQNLT PSIFDAMFQV STPSIESLCP SQASKVAEST EVLNQPTTPN 180 SSSISSASNE EQSRVVEEEE EHPKTQKQLK AKKVSQKRGE REPRFAFMTK SEVDQLEDGY 240 RWRKYGQKAV KNSPFPRSYY RCTNSTCNVK KRVERCLGDP SIVVTTYEGK HTHLSPNSAT 300 GPGLSADRAS AAAFAQRVQV AMPLHHDQPQ LINNLRFQKP TYADYGLLQD IVPSLVKKED 360 *

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MKITLLTQAT KPTLKNLPQE LSIGKLSPAP YQQYEQRPQA GPIRRSISGQ GLSLWAYQGL  60
SPAQLSHLTC RGDVIGPQDF CPRSLSLSKI IQSMEWKAAV KIEDPIRSTP FTDHFPLSDL  120
LDGEKSSLGF MELLGIQNLT PSIFDAMFQV STPSIESLCP SQASKVAEST EVLNQPTTPN  180
SSSISSASNE EQSRVVEEEE EHPKTQKQLK AKKVSQKRGE REPRFAFMTK SEVDQLEDGY  240
RWRKYGQKAV KNSPFPRSYY RCTNSTCNVK KRVERCLGDP SIVVTTYEGK HTHLSPNSAT  300
GPGLSADRAS AAAFAQRVQV AMPLHHDQPQ LINNLRFQKP TYADYGLLQD IVPSLVKKED  360
*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	6e-26	229	296	10	77	Probable WRKY transcription factor 4
2lex_A	6e-26	229	296	10	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028117835.1	2e-85	WRKY transcription factor 23-like isoform X2
Swissprot	O22900	3e-50	WRK23_ARATH; WRKY transcription factor 23
TrEMBL	A0A2R6P5M3	0.0	A0A2R6P5M3_ACTCH; WRKY transcription factor 23
STRING	XP_010259241.1	7e-73	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1309	24	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47260.1	2e-48	WRKY DNA-binding protein 23

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Guo D,Qin G EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses. Plant Signal Behav, 2016. 11(3): p. e1150404 [PMID:26914912] Prát T, et al. WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity. PLoS Genet., 2018. 14(1): p. e1007177 [PMID:29377885]