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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn377931 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | WRKY | ||||||||
Protein Properties | Length: 361aa MW: 40092.4 Da PI: 8.9298 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.7 | 1e-32 | 237 | 293 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+ver+ dp++v++tYeg+H+h Achn377931 237 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSTCNVKKRVERCLGDPSIVVTTYEGKHTH 293 8******************************************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.9E-34 | 221 | 296 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-28 | 228 | 296 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.274 | 231 | 296 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.0E-39 | 236 | 295 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.5E-26 | 237 | 293 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MKITLLTQAT KPTLKNLPQE LSIGKLSPAP YQQYEQRPQA GPIRRSISGQ GLSLWAYQGL 60 SPAQLSHLTC RGDVIGPQDF CPRSLSLSKI IQSMEWKAAV KIEDPIRSTP FTDHFPLSDL 120 LDGEKSSLGF MELLGIQNLT PSIFDAMFQV STPSIESLCP SQASKVAEST EVLNQPTTPN 180 SSSISSASNE EQSRVVEEEE EHPKTQKQLK AKKVSQKRGE REPRFAFMTK SEVDQLEDGY 240 RWRKYGQKAV KNSPFPRSYY RCTNSTCNVK KRVERCLGDP SIVVTTYEGK HTHLSPNSAT 300 GPGLSADRAS AAAFAQRVQV AMPLHHDQPQ LINNLRFQKP TYADYGLLQD IVPSLVKKED 360 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-26 | 229 | 296 | 10 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 6e-26 | 229 | 296 | 10 | 77 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028117835.1 | 2e-85 | WRKY transcription factor 23-like isoform X2 | ||||
Swissprot | O22900 | 3e-50 | WRK23_ARATH; WRKY transcription factor 23 | ||||
TrEMBL | A0A2R6P5M3 | 0.0 | A0A2R6P5M3_ACTCH; WRKY transcription factor 23 | ||||
STRING | XP_010259241.1 | 7e-73 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1309 | 24 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47260.1 | 2e-48 | WRKY DNA-binding protein 23 |
Publications ? help Back to Top | |||
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