PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn377511 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | NAC | ||||||||
Protein Properties | Length: 324aa MW: 36759.6 Da PI: 6.5142 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.7 | 7.6e-56 | 16 | 142 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdeel+++yL +kv ++ + + ++i evd++kvePw+Lp ++k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkd+e+++ +++l Achn377511 16 LPPGFRFHPTDEELITHYLSQKVIDTCFCA-RAIGEVDLNKVEPWNLPWRAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDREIYQ-GKAL 112 79***********************99888.89***************888999****************************************.99** PP NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129 +g+kktLvfykgrapkgekt+Wvmheyrle Achn377511 113 IGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 142 ****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.62E-63 | 11 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.892 | 16 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-29 | 17 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MEKGSSLNRE HERMELPPGF RFHPTDEELI THYLSQKVID TCFCARAIGE VDLNKVEPWN 60 LPWRAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDREIYQGK ALIGMKKTLV 120 FYKGRAPKGE KTNWVMHEYR LEGKFSPQNM PKTAKNEWVI SRVFHKSSGG KKIHISGLMP 180 SNLPPLMDCS ASAHAPCFSD PMEEQKPQND TVGSFKSPLL ASSSSSKASD FSPPPIPFPD 240 SLFSTQFLPN IGNLQYPDFQ DQSILSLLLE NNEMDMKRDL KAEFSPVSTD ISSNHEVGQM 300 NYEDQEDPIT SGGPVDIDCL WNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-52 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-52 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-52 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-52 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-52 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-52 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-52 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-52 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-52 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-52 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-52 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-52 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-52 | 13 | 172 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-52 | 13 | 172 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028111639.1 | 1e-155 | NAC domain-containing protein 100-like | ||||
Swissprot | Q9FLJ2 | 1e-131 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A2R6P9J7 | 0.0 | A0A2R6P9J7_ACTCH; NAC domain-containing protein | ||||
STRING | VIT_14s0108g01070.t01 | 1e-149 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-125 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
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