PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn377511

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NAC

Protein Properties

Length: 324aa MW: 36759.6 Da PI: 6.5142

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn377511	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.7	7.6e-56	16	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdeel+++yL +kv ++ + + ++i evd++kvePw+Lp ++k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkd+e+++ +++l Achn377511 16 LPPGFRFHPTDEELITHYLSQKVIDTCFCA-RAIGEVDLNKVEPWNLPWRAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDREIYQ-GKAL 112 79*********************99888.89***********888999************************************.99 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129 +g+kktLvfykgrapkgekt+Wvmheyrle Achn377511 113 IGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 142 ****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.62E-63	11	166	IPR003441	NAC domain
PROSITE profile	PS51005	57.892	16	166	IPR003441	NAC domain
Pfam	PF02365	1.6E-29	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MEKGSSLNRE HERMELPPGF RFHPTDEELI THYLSQKVID TCFCARAIGE VDLNKVEPWN 60 LPWRAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDREIYQGK ALIGMKKTLV 120 FYKGRAPKGE KTNWVMHEYR LEGKFSPQNM PKTAKNEWVI SRVFHKSSGG KKIHISGLMP 180 SNLPPLMDCS ASAHAPCFSD PMEEQKPQND TVGSFKSPLL ASSSSSKASD FSPPPIPFPD 240 SLFSTQFLPN IGNLQYPDFQ DQSILSLLLE NNEMDMKRDL KAEFSPVSTD ISSNHEVGQM 300 NYEDQEDPIT SGGPVDIDCL WNY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-52	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-52	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-52	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-52	13	172	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-52	13	172	17	174	NAC domain-containing protein 19
3swm_B	1e-52	13	172	17	174	NAC domain-containing protein 19
3swm_C	1e-52	13	172	17	174	NAC domain-containing protein 19
3swm_D	1e-52	13	172	17	174	NAC domain-containing protein 19
3swp_A	1e-52	13	172	17	174	NAC domain-containing protein 19
3swp_B	1e-52	13	172	17	174	NAC domain-containing protein 19
3swp_C	1e-52	13	172	17	174	NAC domain-containing protein 19
3swp_D	1e-52	13	172	17	174	NAC domain-containing protein 19
4dul_A	1e-52	13	172	14	171	NAC domain-containing protein 19
4dul_B	1e-52	13	172	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028111639.1	1e-155	NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	1e-131	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2R6P9J7	0.0	A0A2R6P9J7_ACTCH; NAC domain-containing protein
STRING	VIT_14s0108g01070.t01	1e-149	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-125	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]