PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn377111 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | FAR1 | ||||||||
Protein Properties | Length: 248aa MW: 28073.7 Da PI: 4.627 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 77.6 | 2.4e-24 | 84 | 172 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY eYA+++GF vr+ + + s+++g+i++r++ C+k+g++ + + +++++ r gCka++ +k+ek+gkw+v+++++eHnH+l+ Achn377111 84 RFYFEYARKIGFVVRIMQRRCSETDGRIVSRRLGCNKQGFSPNYGTI-GPDKKPKSCAREGCKATILMKLEKSGKWVVSRFVKEHNHPLV 172 59**************************************9998887.99**************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.7E-22 | 84 | 172 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MLVDNFLVDL DKREGALDNP TQVNISVCDG AEVQEPHVGM EFDLDEQEGA LDILTEGNII 60 VCDEAEVQEP YVGMEFDSED DAKRFYFEYA RKIGFVVRIM QRRCSETDGR IVSRRLGCNK 120 QGFSPNYGTI GPDKKPKSCA REGCKATILM KLEKSGKWVV SRFVKEHNHP LVVTEQGLST 180 YGDKDNKIEQ LTRELRRQDQ LCAAYREILQ KFLTSIEEQA DQLSTKIQDV VQNVREVEAE 240 AQTTLSK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028120634.1 | 1e-107 | protein FAR1-RELATED SEQUENCE 5-like isoform X2 | ||||
TrEMBL | A0A2R6QJL6 | 1e-177 | A0A2R6QJL6_ACTCH; Protein FAR1-RELATED SEQUENCE like (Fragment) | ||||
STRING | EOX93722 | 3e-88 | (Theobroma cacao) | ||||
STRING | evm.model.supercontig_8.54 | 2e-88 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11602 | 20 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12850.1 | 3e-63 | FAR1 family protein |