PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn377091 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | FAR1 | ||||||||
Protein Properties | Length: 733aa MW: 82011.2 Da PI: 6.8144 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 88.2 | 1.2e-27 | 381 | 469 | 2 | 89 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +Y++YAk++GF +r+ + ++s+r+g++++r+f C+keg+r ++kk + + r++r+ tr gCka+++v+kek+gkw+vtkle+eH+H+l Achn377091 381 YYDAYAKRIGFVIRVGNCHRSSRDGSVISRRFLCNKEGFRVNNKKVkRLEVRKPREITREGCKAMIMVRKEKSGKWVVTKLETEHSHPL 469 8***************************************9988873567899**********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13041 | 2.4E-7 | 91 | 138 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 10.227 | 92 | 126 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 0.0015 | 94 | 127 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 5.645 | 127 | 161 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 6.16 | 193 | 223 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF01535 | 0.86 | 198 | 216 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF13041 | 6.6E-12 | 223 | 269 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 12.836 | 224 | 258 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 1.1E-7 | 226 | 260 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF03101 | 8.2E-27 | 381 | 469 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 733 aa Download sequence Send to blast |
MDSINLAVVG NSPFPPNSNP SSRSKHTQER KRIISLLQKC KNINQITPIH TQIIIKGHDQ 60 DPFFVFELLR VSSNFNSMDY ASKVFKQTQN PNVYLYTAII DGFVKSGSYM DGIWVYSQMI 120 ERCVMPDNYA ITSVFRACGS QLSLKEGREI HAQALKLNLS SIRSVRMKLL ELYGKCLGFG 180 DAWLVFDEMP ERDCVASTVM ISCYVDYGLV EEARSALDWV QMKDTVCWTA MVDGLVRNGE 240 MNRALELFWD MQREGVRPNE VTIVCVIRVF TVGSIRAWAN KDGIDEAAKA KPVPMNFSTY 300 MSQHYKMLAE PGGIEPDADM DNSDVDDKVL ETSVGREICE SEGGEMINLY DERDLILHET 360 DGDMEPYLGM EFESEEAAMV YYDAYAKRIG FVIRVGNCHR SSRDGSVISR RFLCNKEGFR 420 VNNKKVKRLE VRKPREITRE GCKAMIMVRK EKSGKWVVTK LETEHSHPLG IPAGKGRRGT 480 IQARPQDEKD KKIRELSTQL HRANQQLAEC RKQLDMVLKD IEHHTSHITT SIEEIVQHIK 540 EVEDEEEEQS EPYPKDPSSS RRTTSTTSVH VTALDGLVNV NSLFTIAVFV GLSLATPGQH 600 SLENPSACDA GLGAAKKLLV FEVVSFSFFL FSSLVAQGLK LAINLLNSKD TDEAFRAHIN 660 IRVLRFGMMG SAVGSVMGCL FLMLSMVSVI EIRLGKLSCG NKSAVHAVAA LVILVTSALV 720 VYISTAVYAF LH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5iww_D | 5e-26 | 35 | 268 | 2 | 319 | PLS9-PPR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 6e-55 | FAR1 family protein |