PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn377091
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 733aa    MW: 82011.2 Da    PI: 6.8144
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn377091genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR188.21.2e-27381469289
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                 +Y++YAk++GF +r+ + ++s+r+g++++r+f C+keg+r ++kk  + + r++r+ tr gCka+++v+kek+gkw+vtkle+eH+H+l
  Achn377091 381 YYDAYAKRIGFVIRVGNCHRSSRDGSVISRRFLCNKEGFRVNNKKVkRLEVRKPREITREGCKAMIMVRKEKSGKWVVTKLETEHSHPL 469
                 8***************************************9988873567899**********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF130412.4E-791138IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.22792126IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.001594127IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.645127161IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.16193223IPR002885Pentatricopeptide repeat
PfamPF015350.86198216IPR002885Pentatricopeptide repeat
PfamPF130416.6E-12223269IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.836224258IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.1E-7226260IPR002885Pentatricopeptide repeat
PfamPF031018.2E-27381469IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MDSINLAVVG NSPFPPNSNP SSRSKHTQER KRIISLLQKC KNINQITPIH TQIIIKGHDQ  60
DPFFVFELLR VSSNFNSMDY ASKVFKQTQN PNVYLYTAII DGFVKSGSYM DGIWVYSQMI  120
ERCVMPDNYA ITSVFRACGS QLSLKEGREI HAQALKLNLS SIRSVRMKLL ELYGKCLGFG  180
DAWLVFDEMP ERDCVASTVM ISCYVDYGLV EEARSALDWV QMKDTVCWTA MVDGLVRNGE  240
MNRALELFWD MQREGVRPNE VTIVCVIRVF TVGSIRAWAN KDGIDEAAKA KPVPMNFSTY  300
MSQHYKMLAE PGGIEPDADM DNSDVDDKVL ETSVGREICE SEGGEMINLY DERDLILHET  360
DGDMEPYLGM EFESEEAAMV YYDAYAKRIG FVIRVGNCHR SSRDGSVISR RFLCNKEGFR  420
VNNKKVKRLE VRKPREITRE GCKAMIMVRK EKSGKWVVTK LETEHSHPLG IPAGKGRRGT  480
IQARPQDEKD KKIRELSTQL HRANQQLAEC RKQLDMVLKD IEHHTSHITT SIEEIVQHIK  540
EVEDEEEEQS EPYPKDPSSS RRTTSTTSVH VTALDGLVNV NSLFTIAVFV GLSLATPGQH  600
SLENPSACDA GLGAAKKLLV FEVVSFSFFL FSSLVAQGLK LAINLLNSKD TDEAFRAHIN  660
IRVLRFGMMG SAVGSVMGCL FLMLSMVSVI EIRLGKLSCG NKSAVHAVAA LVILVTSALV  720
VYISTAVYAF LH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D5e-26352682319PLS9-PPR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.16e-55FAR1 family protein