PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn372231 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | FAR1 | ||||||||
Protein Properties | Length: 135aa MW: 15526.4 Da PI: 4.6772 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 26.9 | 1.6e-08 | 41 | 95 | 1 | 48 |
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk......t 48 k+Y++Y+++ GF r+++s+k+ +r + +t+ +vC kegk+ ++++k + Achn372231 41 KYYEDYGRQNGFCFRTRTSSKRqNRLDDMTSMLLVCAKEGKNVPKTEKngmegnD 95 69**********9988776665367788**************9999885555431 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.0E-6 | 41 | 98 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MEESFGDDFE VEDMQTLNND VEKIEAQSNG MSFETIEEAR KYYEDYGRQN GFCFRTRTSS 60 KRQNRLDDMT SMLLVCAKEG KNVPKTEKNG MEGNDERAKD DKVVKYYRKK EKEVVQLLNV 120 DATLICRLSV INGV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008219733.2 | 5e-20 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2R6R5G6 | 3e-32 | A0A2R6R5G6_ACTCH; Protein FAR1-RELATED SEQUENCE like | ||||
STRING | EMJ10165 | 5e-19 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06250.1 | 4e-06 | FAR1-related sequence 7 |