PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn371091
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GATA
Protein Properties Length: 358aa    MW: 38854.9 Da    PI: 4.5483
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn371091genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.72.5e-16258291132
        GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrk 32 
                 C++C t++  Tp++Rrgpdg++tLCnaCGl+++ 
  Achn371091 258 CTHCSTSSksTPMMRRGPDGPRTLCNACGLKWAN 291
                 ********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132010.224150185IPR010399Tify domain
PfamPF062001.5E-7154175IPR010399Tify domain
PfamPF062031.6E-16189231IPR010402CCT domain
PROSITE profilePS5101713.195189231IPR010402CCT domain
SMARTSM004012.6E-10252309IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.576252287IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.24E-9254292No hitNo description
Gene3DG3DSA:3.30.50.107.5E-13256292IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.93E-12257323No hitNo description
PROSITE patternPS003440258285IPR000679Zinc finger, GATA-type
PfamPF003204.1E-14258292IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MKQEPSVTDT MTTEAAKLWM FATNFLSTWK AFERISPDIS GLEPNNASAI GMTPGFWLLN  60
AEMEMTNRQP SMYGTDAMNV QQQQQQIEDE EDDDVAVLES IDNPQIRFEA HALHDGAIVV  120
SDRDGAVNGG DGVHPHALYV PGSEIPPATG GGGPDQLTLS FQGEVYVFDA VSPEKGLGDF  180
PGRSSQPQRD ASLNRFREKR KERCFDKKIR YNVRKEVALR MQRRKGQFTS SKAISDEMGS  240
SDWNASQGPG QEEEETACTH CSTSSKSTPM MRRGPDGPRT LCNACGLKWA NKVGTDRVGL  300
IHEAQVLQGV LRDLSKVPAA GIQDPTVKGT EQSEGEANDS DAVNSAADIV DSSNGDN*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028093060.11e-146GATA transcription factor 28-like isoform X1
RefseqXP_028093061.11e-146GATA transcription factor 28-like isoform X2
SwissprotQ8GXL72e-58GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A2R6Q6940.0A0A2R6Q694_ACTCH; GATA transcription factor
STRINGEOX986511e-107(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26722348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.26e-61ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]