PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn368981
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 244aa    MW: 27658.4 Da    PI: 4.8065
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn368981genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.81.9e-135597754
                HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                  Er+RR+++N++++ Lr ++Pk +      K++Ka+i + A++YI++L
  Achn368981 55 VSERNRRKKLNERLFALRAVVPKiS------KMDKASIIKDAIDYIQEL 97
                57*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.3674897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-1748112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-1251102No hitNo description
Gene3DG3DSA:4.10.280.101.7E-1654112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-1454103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-115597IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MENIGEEYKH YWETNMFLQT EELDSWGLDE AFNSGYYDSS SPDGAQSSAA SKNIVSERNR  60
RKKLNERLFA LRAVVPKISK MDKASIIKDA IDYIQELHDQ ERRIQAEILQ LESGKLNENG  120
VFDFKEEMPV LLRSKKKRID QSFDFGESRA SPIEDLDLSV SYVGENTVVV SLTCNKRTDT  180
MVKLCEVFET LKLKIIAANI SAFSGRLLKT VFLQADKEEK DLLKIKIETA IAALNDPESP  240
MSM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-1453113969Transcription factor MYC2
5gnj_B7e-1453113969Transcription factor MYC2
5gnj_E7e-1453113969Transcription factor MYC2
5gnj_F7e-1453113969Transcription factor MYC2
5gnj_G7e-1453113969Transcription factor MYC2
5gnj_I7e-1453113969Transcription factor MYC2
5gnj_M7e-1453113969Transcription factor MYC2
5gnj_N7e-1453113969Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023900547.11e-142transcription factor bHLH35
SwissprotQ2HIV91e-85BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A2R6Q3Y11e-178A0A2R6Q3Y1_ACTCH; Transcription factor bHLH35 like
STRINGXP_009348093.11e-141(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29232451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.15e-81bHLH family protein