PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn367821 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | NAC | ||||||||
Protein Properties | Length: 237aa MW: 27116.3 Da PI: 5.0549 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 58.5 | 2.4e-18 | 14 | 61 | 1 | 49 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk 49 + pGfrFhPtdeelv +yL++kve+k+l++ e i++vdiyk++PwdLp+ Achn367821 14 MLPGFRFHPTDEELVGFYLRRKVEKKSLTI-ELIQQVDIYKFDPWDLPN 61 579*************************99.89**************94 PP | |||||||
2 | NAM | 34.9 | 4.6e-11 | 64 | 95 | 97 | 128 |
NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 g+++glkk+Lv+y+g++ kg+kt+W+mhe+rl Achn367821 64 GATIGLKKSLVYYRGSTGKGTKTEWMMHEFRL 95 6789**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-33 | 10 | 140 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 15.743 | 14 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-15 | 16 | 95 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MNISGSKSRD NDVMLPGFRF HPTDEELVGF YLRRKVEKKS LTIELIQQVD IYKFDPWDLP 60 NGGGATIGLK KSLVYYRGST GKGTKTEWMM HEFRLPPSPN NNQHITGTAA RNISTDQEAV 120 RQLLKNGWQE VWTLCRIFKR NATYKIQKKY IPHDEEEEED TVTATKQSSL ESDITHEHER 180 NDPLAVDQKK NEEAPLPPPP PPYSALIWDD DFFRDGNWED LTSVVELAID PSNQSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-21 | 7 | 95 | 5 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002307563.1 | 6e-60 | transcription factor JUNGBRUNNEN 1 isoform X1 | ||||
TrEMBL | A0A2R6QXD8 | 1e-144 | A0A2R6QXD8_ACTCH; Transcription factor JUNGBRUNNEN 1 like | ||||
STRING | POPTR_0005s22710.1 | 2e-59 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA16497 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 2e-45 | NAC domain containing protein 42 |