PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Achn367441 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 255aa MW: 28462.3 Da PI: 8.1488 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37 | 6.3e-12 | 61 | 107 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+E+rRR+riN + Lr+l+P K++Ka+ L ++ +++k+L Achn367441 61 RNHSEAEKRRRERINGHLTSLRSLIPDT-----NKMDKASLLAEVLNHLKEL 107 58*************************6.....5****************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.618 | 58 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.84E-11 | 61 | 109 | No hit | No description |
Pfam | PF00010 | 1.7E-9 | 61 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.79E-13 | 61 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-13 | 62 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-11 | 64 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00792 | 146 | 213 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 255 aa Download sequence Send to blast |
MEFSSSFDGF SKNHALQGII RGGSSSSSSL VLDSERGELV KAMSRPVQKG VKAEKALEAL 60 RNHSEAEKRR RERINGHLTS LRSLIPDTNK MDKASLLAEV LNHLKELRRN AAEATKNILV 120 PMDIDEVRVE QHDGGSDGDS CAIRASLCCD FKHEILSDLR QALDALHLKT VRAEIATFGG 180 SMIYVFFITC CKDGNIDYNE RCRLLASSIR HTIRSVLDKF YASEEISSRS TLSNKRRRVP 240 FFESSNLSSL EDLW* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 234 | 238 | KRRRV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028092207.1 | 1e-132 | transcription factor bHLH30-like | ||||
TrEMBL | A0A2R6QXL2 | 1e-180 | A0A2R6QXL2_ACTCH; Transcription factor bHLH30 like | ||||
STRING | XP_009611307.1 | 1e-107 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11989 | 21 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68810.1 | 1e-33 | bHLH family protein |