PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn366341
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 292aa    MW: 33094.6 Da    PI: 7.0689
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn366341genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000215779123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C+ C + F++   L  H+++H
  Achn366341 57 YSCSFCRREFRSAQALGGHMNVH 79
                99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.11E-65483No hitNo description
SMARTSM003550.00985779IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.2195784IPR007087Zinc finger, C2H2
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDQARYWMWP KRKYGLSSHL HQPPKNPNSC GDSWEEQAFA EDASGALGGC VWPPRSYSCS  60
FCRREFRSAQ ALGGHMNVHR RDRARLKQSP ISPHDEDLHH QQRQNHHHQM DVQYLSRIYN  120
TNPNSDVVLA PPSSISRVSS PPLAQKISNE KTFMPLFSSS ILKDFHKKSS IYAPPSWSTS  180
VAHNYLHLSD LNDEEKNSKI FGSKEDYVTA DLSVSLNLVV HRTRPTSSGS NDEAIGCKRR  240
RIDSTTFQFF TESYSADNSH NLQSEVLEGS SSSEEELDLE LRLGDQPEVK Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A8e-135279229superman protein
2l1o_A8e-135279229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237241KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ4184789e-31HQ418478.1 Malus x domestica transcriptional regulator superman (SUP1b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028091540.11e-126zinc finger protein 10-like
TrEMBLA0A2R6RY440.0A0A2R6RY44_ACTCH; Transcriptional regulator RABBIT EARS like
STRINGEOY074445e-99(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90452026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.14e-27C2H2 family protein