PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn366151 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | LBD | ||||||||
Protein Properties | Length: 294aa MW: 32986.5 Da PI: 5.0676 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.1 | 1.4e-38 | 10 | 108 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCaaCk++rr+C+++C+lapyfp +qpk f+n+hklFG+sn+lk+lk+l++ ++ +am+s++y+A++r r Pv+G++ v+++lq q++q+++el ++ + Achn366151 10 ACAACKYQRRRCSTECPLAPYFPPDQPKMFQNAHKLFGVSNILKILKQLNTVQKMEAMRSIIYQANIRDRFPVHGCCWVMSQLQYQIQQAEEELYAVLA 108 7********************************************************************************************987655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.99 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.2E-37 | 10 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0009786 | Biological Process | regulation of asymmetric cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MTLKGGTSQA CAACKYQRRR CSTECPLAPY FPPDQPKMFQ NAHKLFGVSN ILKILKQLNT 60 VQKMEAMRSI IYQANIRDRF PVHGCCWVMS QLQYQIQQAE EELYAVLAQI AFFQQQKQQQ 120 QQQEINNNNN VNDSASQLQA LSLFHQEAPV NADASALPIA SSYPNVAAAY SSGYPDHKDN 180 LVNSFWVQQH PYVNGNNNSS NSNNNNNNNI SMAMQSQMVS SPQLIIQQEQ AQEYDEMHPF 240 FDTIDDRQSY IDSKEAYDSS SDSSLKDTTQ SVEHIADNEL KSAAACFSLT SVN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-26 | 6 | 103 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-26 | 6 | 103 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028092842.1 | 1e-131 | LOB domain-containing protein 27-like | ||||
Swissprot | Q9STS6 | 2e-60 | LBD27_ARATH; LOB domain-containing protein 27 | ||||
TrEMBL | A0A2R6QGX2 | 1e-153 | A0A2R6QGX2_ACTCH; LOB domain-containing protein | ||||
STRING | cassava4.1_033210m | 1e-123 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1449 | 23 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 7e-51 | LOB domain-containing protein 27 |
Publications ? help Back to Top | |||
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