PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn365031

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Trihelix

Protein Properties

Length: 305aa MW: 33651.4 Da PI: 7.854

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn365031	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.7	9.6e-16	240	303	1	64
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykki 64 +W+ +ev++Li +r +++++ k++++lWee+s+++ + g++rsp qCk+ w +l ++y+ + Achn365031 240 KWKPEEVKKLIIMRGALHSKFLVVKRRMALWEEISANLLADGVNRSPGQCKSLWTSLVQKYEVC 303 7************************************************************865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.503	233	297	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	8.2E-5	234	299	IPR009057	Homeodomain-like
Pfam	PF13837	1.3E-10	238	301	No hit	No description
CDD	cd12203	3.10E-19	239	301	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MEILRPEDAD GVEKALKGKI RISTRCLWLD KGKLLDVLHK AAHAALSSCP VNCPLAHMER 60 IVSEVLRKMV RKYSSKRPEV IAIAIENPVA VLSEELNTRL SCKSSVGLGT SALRKVVDGQ 120 PKTRQPNGIQ EEEGSGNVHS VNNTQQKFEE RGIEHELLLS EEATTSGSES VESFSTDSED 180 SDDFWKSFVA SSPIDQLVKD GNGSVPQEEH GEKLKKEVKV DDGGMSKSEL KSSKSATRNK 240 WKPEEVKKLI IMRGALHSKF LVVKRRMALW EEISANLLAD GVNRSPGQCK SLWTSLVQKY 300 EVCS*

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250\|UniProtKB:Q72JJ7, ECO:0000269\|PubMed:15266054, ECO:0000269\|PubMed:22033332, ECO:0000269\|PubMed:25871650}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. {ECO:0000269\|PubMed:25871650}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028058466.1	1e-152	ribonuclease J-like isoform X3
Refseq	XP_028058467.1	1e-153	ribonuclease J-like isoform X4
Refseq	XP_028058468.1	1e-153	ribonuclease J-like isoform X4
Refseq	XP_028058469.1	1e-153	ribonuclease J-like isoform X4
Refseq	XP_028058470.1	1e-153	ribonuclease J-like isoform X4
Swissprot	Q84W56	2e-87	RNJ_ARATH; Ribonuclease J
TrEMBL	A0A2R6QGD4	0.0	A0A2R6QGD4_ACTCH; Ribonuclease
STRING	EOY22451	1e-116	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5874	23	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	1e-83	Trihelix family protein

Publications ? help Back to Top
Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis. Plant Physiol., 2011. 155(4): p. 1678-89 [PMID:21139083] Halpert M,Liveanu V,Glaser F,Schuster G The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities. Plant Mol. Biol., 2019. 99(1-2): p. 17-29 [PMID:30511330]