PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn364941 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | GRAS | ||||||||
Protein Properties | Length: 467aa MW: 52027.9 Da PI: 6.7401 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 359.6 | 4.7e-110 | 95 | 465 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs.elykal.ppsetseknsseelaalklfsevsPilkfshlta 98 v lL++c eav+ +d+ +a+alL++l+ g+++qR+a++f+++La rla + + + + p+ + ++ s+++ al l +e++P ++f+h++a Achn364941 95 VYLLVSCTEAVACRDKPRASALLSELRASTLVFGSSFQRVASCFVQGLADRLALVRPlGAVGFVePTMNLMDHASDKKEEALGLVYELCPHIQFGHFVA 193 679*************************************************98433133333323333334448888899999*************** PP GRAS 99 NqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192 N+aIlea+ege+ vH++D+++s +G QW L+q+La+R+++p lRiTgvg +e+ +g+ L+ +A+++g+++ef+v ++++le+l+++ Achn364941 194 NSAILEAFEGESFVHVVDLGMSlglaHGYQWRQLIQSLADRAGPPLrCLRITGVGL----CAERFLVIGDELEAYAQSMGIHLEFSV-IESNLENLRPK 287 ******************98763333789************9888669********....9*************************9.799******** PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291 +++ k E+l+Vn++lqlh +++es + +vL+++ +lsPkv+v+veq+++hn++ F+ rf+eal+yysa+fdsl+a lp+ + r+k+E+++++ Achn364941 288 DIKQKDSEVLVVNSILQLHCVVKESRGALN---SVLQIIHELSPKVLVLVEQDSSHNGPFFVGRFMEALHYYSAIFDSLDAMLPKYDTRRAKMEQFFFA 383 **********************88877777...8***************************************************************** PP GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+p+pl+ +++qak l k+k dgy++ ee+g+lvlgWk++p+v++S+W+ Achn364941 384 EEIKNIVSCEGPARVERHEKVDQWRRRMSRAGFQPAPLK--IVAQAKQFLGKIKaCDGYTILEEKGCLVLGWKSKPIVAASCWK 465 *************************************95..899***************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 57.237 | 68 | 446 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.6E-107 | 95 | 465 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence Send to blast |
MAYYPHPYLP LLENTSTTLF PKFSDETVGH KRLKRTTSTN SLNGMSRLQF RDHIWTYSQR 60 YLAAEAVEAA AAAVMGSSED GKTEEDEAGD EMRLVYLLVS CTEAVACRDK PRASALLSEL 120 RASTLVFGSS FQRVASCFVQ GLADRLALVR PLGAVGFVEP TMNLMDHASD KKEEALGLVY 180 ELCPHIQFGH FVANSAILEA FEGESFVHVV DLGMSLGLAH GYQWRQLIQS LADRAGPPLR 240 CLRITGVGLC AERFLVIGDE LEAYAQSMGI HLEFSVIESN LENLRPKDIK QKDSEVLVVN 300 SILQLHCVVK ESRGALNSVL QIIHELSPKV LVLVEQDSSH NGPFFVGRFM EALHYYSAIF 360 DSLDAMLPKY DTRRAKMEQF FFAEEIKNIV SCEGPARVER HEKVDQWRRR MSRAGFQPAP 420 LKIVAQAKQF LGKIKACDGY TILEEKGCLV LGWKSKPIVA ASCWKC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-58 | 101 | 464 | 26 | 378 | Protein SCARECROW |
5b3h_A | 9e-59 | 101 | 464 | 25 | 377 | Protein SCARECROW |
5b3h_D | 9e-59 | 101 | 464 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028063309.1 | 0.0 | DELLA protein RGL1-like | ||||
TrEMBL | A0A2R6QGH7 | 0.0 | A0A2R6QGH7_ACTCH; DELLA protein | ||||
STRING | XP_009359535.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8167 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 8e-79 | RGA-like 1 |