PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn364811
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NF-YB
Protein Properties Length: 206aa    MW: 21958.4 Da    PI: 6.7816
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn364811genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB181.28.7e-5725119195
       NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                 vreqdrflPian+srimkk+lPan+ki+kdaketvqecvsefisfvtseasdkcqrekrktingddllwa+atlGfedy++plkvyl++yre ++
  Achn364811  25 VREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLARYREGDT 119
                 69*****************************************************************************************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.2E-5320130IPR009072Histone-fold
SuperFamilySSF471137.45E-3928125IPR009072Histone-fold
PfamPF008083.3E-283195IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.7E-205977No hitNo description
PROSITE patternPS0068506278IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.7E-207896No hitNo description
PRINTSPR006151.7E-2097115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MADGGPLSPG GGSHESGDQS PRSGVREQDR FLPIANISRI MKKALPANGK IAKDAKETVQ  60
ECVSEFISFV TSEASDKCQR EKRKTINGDD LLWAMATLGF EDYIDPLKVY LARYREGDTK  120
GTAKGGEGSA RKDVQSGPNV QLAHQGSFSQ GMGYGNSQVV GANGVGYNEC GLGRGEVVEG  180
GRVTSSTYDA AHARQRVEWV LNLFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A1e-4624116193NF-YB
4awl_B9e-4724116294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A9e-4724116294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4g91_B7e-4725116192Transcription factor HapC (Eurofung)
4g92_B7e-4725116192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015969981.11e-100nuclear transcription factor Y subunit B-10
RefseqXP_015969982.11e-100nuclear transcription factor Y subunit B-10
RefseqXP_025605060.11e-100nuclear transcription factor Y subunit B-10
SwissprotQ8VYK41e-79NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A2R6R8581e-108A0A2R6R858_ACTCH; Nuclear transcription factor Y subunit B-8 like
STRINGXP_007162720.11e-98(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.37e-82nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]