PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn364631 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | C2H2 | ||||||||
Protein Properties | Length: 1152aa MW: 129061 Da PI: 7.6513 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.3 | 0.00053 | 1039 | 1064 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C C +sF+++ +L H r+ + Achn364631 1039 HRCDleGCRMSFKTRADLLLHKRNrC 1064 789999****************9877 PP | |||||||
2 | zf-C2H2 | 11.2 | 0.0012 | 1122 | 1148 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C+ Cg +F+ s+++rH r+ H Achn364631 1122 YECKveGCGLTFRFISDYNRHRRKtkH 1148 89*********************9777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00545 | 2.3E-13 | 15 | 55 | IPR003349 | JmjN domain |
PROSITE profile | PS51183 | 13.619 | 16 | 57 | IPR003349 | JmjN domain |
Pfam | PF02375 | 2.4E-13 | 17 | 50 | IPR003349 | JmjN domain |
SMART | SM00558 | 1.4E-45 | 283 | 452 | IPR003347 | JmjC domain |
PROSITE profile | PS51184 | 32.872 | 286 | 452 | IPR003347 | JmjC domain |
SuperFamily | SSF51197 | 4.67E-26 | 287 | 449 | No hit | No description |
Pfam | PF02373 | 4.1E-36 | 316 | 435 | IPR003347 | JmjC domain |
SMART | SM00355 | 13 | 1039 | 1061 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.6E-5 | 1062 | 1099 | No hit | No description |
PROSITE profile | PS50157 | 12.009 | 1062 | 1091 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.082 | 1062 | 1086 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.9E-4 | 1063 | 1090 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 1064 | 1086 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 8.1E-10 | 1091 | 1116 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0054 | 1092 | 1116 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.863 | 1092 | 1121 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 1094 | 1116 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.95E-10 | 1102 | 1144 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.3E-10 | 1117 | 1144 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.059 | 1122 | 1148 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.349 | 1122 | 1151 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 1124 | 1148 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1152 aa Download sequence Send to blast |
MRDVEIPNWL KGLPLAPEFR PTDTEFADPI SYISKIEKEA SIFGICKVIP PLPKPSKKFV 60 VSNLNKSLLK NPELGRDLNL GGTESGNEAN DGEARAVFTT RQQELGQNAK TTKKVAHPQP 120 PTVRKLVWQS GEIYTLEQFE SKSKSFAKNQ LGSVKDVSPL AIEALFWKAA SEKPIHIEYA 180 NDVPGSGFGE PEGSFRYFHR RRRRRTFNRN TGGSYNSGKY QVNSMSSNYE NKEESAKNSP 240 NSSRETSKVS ISLPTISSNQ TSQFSRQKSS TAAKEMEGSA GWKLSNCHWN LQVIARSPGS 300 LTRFMPDDIP GVTSPMVYIG MLFSWFAWHV EDHELHSLNF LHTGSPKTWY AVPGDYAFAF 360 EEVIRNQGYG GNIDRLAALT LLGEKTTLLS PEVVVESGIP CCRLIQNPGE FVVTFPRAYH 420 VGFSHGFNCG EAANFGTSKW LNVAKEAAVR RAAMNHLPML SHQQLLYLLT MSFASRVPRS 480 LLPGARNSRL RDRQKEEREL SVKKAFIEDI LNENNLLTIL LGKNSSYHVV LWDLESLPSP 540 RQDPALCSNV APVETAPRKD VCYENKNNQD LFSEMSLYME TVNDLYADCD DLSCNFQVDS 600 GALACVACGI LGFPFMSVVQ PSEKASMDLQ DLALSNPMEF HSPAVLDHMV EGFVSDGLKD 660 KIERNDSNAL RLPNETSSSA ESANSMVLPS EDLSTSHDPS PPPKDLPVSS EAKFEKGWSA 720 SRGFLRPRIF CMEHAIQIEE MLHSKGGANV LVICHSDFQK IKAHVATVAE EIDSRFGYNE 780 ISLDDASQED LNLIDLAIDG EEHDECGEDW TSKLSINLRH CVKVRKNSAS KQVQHALALG 840 GLFSDSTPGS NTSNLKWPSR KSRSKRNINH SLHIKPSESI GLDNPVQEKP SESIQIEKVE 900 VMGAKLDDTV VRKEEESLEV PIKANAAEGM QSDSENPCLA DERELENNGF TKVRPRSPAR 960 NGKKRRRNVE LQIEDQFDYN SFIRSPCERL RPRAAKDSKQ GGIESNETFE EKPAAKKASK 1020 PSDDFPSRKG KKENQKGSHR CDLEGCRMSF KTRADLLLHK RNRCPHKGCG KEFSSHKYAV 1080 LHQRVHDDDR PLKCPWEGCA MSFKWAWART EHIRVHTGER PYECKVEGCG LTFRFISDYN 1140 RHRRKTKHYV T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ip0_A | 4e-55 | 273 | 466 | 144 | 346 | Transcription factor jumonji (Jmj) family protein |
6ip4_A | 4e-55 | 273 | 466 | 144 | 346 | Arabidopsis JMJ13 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 195 | 204 | RYFHRRRRRR |
2 | 200 | 205 | RRRRRT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:19946624}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM479252 | 9e-99 | AM479252.2 Vitis vinifera contig VV78X066822.6, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028071343.1 | 0.0 | probable lysine-specific demethylase ELF6 | ||||
Swissprot | Q6BDA0 | 0.0 | ELF6_ARATH; Probable lysine-specific demethylase ELF6 | ||||
TrEMBL | A0A2R6RTT0 | 0.0 | A0A2R6RTT0_ACTCH; Lysine-specific demethylase (Fragment) | ||||
STRING | POPTR_0010s23160.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4835 | 17 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04240.1 | 0.0 | C2H2 family protein |
Publications ? help Back to Top | |||
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