PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn363861 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | AP2 | ||||||||
Protein Properties | Length: 399aa MW: 43916.9 Da PI: 4.8479 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 26.7 | 1.4e-08 | 135 | 178 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+++ ++gr d + k+++lg f+ta Aa+a+++a+ k++g Achn363861 135 SQYRGVTFYWRTGR------D------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 178 789***99999999......5......56************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 12.813 | 126 | 186 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.4E-10 | 135 | 187 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.0E-21 | 136 | 192 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-11 | 150 | 186 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 11.588 | 175 | 265 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-7 | 217 | 271 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.51E-9 | 221 | 267 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-10 | 232 | 265 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.24E-13 | 232 | 267 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MWDLNDSPDP TTRNDESEVC SYGDDDKGKR VGSVSNSSSS AVDDEDSGGQ KRSGSKIFGF 60 SVTQPDDTYS SEPDPPVTHQ FFPSSDDGGA ANFPRAHWVG VRFSQSEGPA AAAGKFTNIT 120 QPLKKSRRGP RSRSSQYRGV TFYWRTGRDC GKQVYLGGFD TAHAAARAYD RAAIKFRGVE 180 ADINFTLEEY EEDLKQVASL ILLNYWYFSA ENSILIRNTW ADIENLVANP LYVYLGLFDT 240 EIEAARAYDK AAIKCNGKEA VTNFDPSIYE DEFNSTECSG NPSDHNLDLS LGCSASKQKS 300 RDVAADQHHT SMPFEVSDLR NHGFQPKVQC PSSSTNDNGG YLSLSTSDCQ NWQLNIINNP 360 PQVFATAAAS SGFPQQKITT TPQNWLQQNG FHFSMRPS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN247401 | 0.0 | JN247401.1 Actinidia deliciosa cultivar Hayward APETALA2 mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028061695.1 | 1e-109 | AP2-like ethylene-responsive transcription factor TOE3 | ||||
Swissprot | P47927 | 2e-85 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | A0A2R6RL37 | 0.0 | A0A2R6RL37_ACTCH; Floral homeotic protein like | ||||
STRING | cassava4.1_005852m | 1e-100 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2019 | 23 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 9e-82 | AP2 family protein |