PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn362971
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 786aa    MW: 86957 Da    PI: 4.5107
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn362971genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.4e-07290309525
                 --SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                 +C+ffa+ G+C  G++C+F H
  Achn362971 290 ICDFFAK-GWCIKGNSCRFLH 309
                 8******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.69285312IPR000571Zinc finger, CCCH-type
SMARTSM003568.6E-4285311IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-6285309IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-5290309IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 786 aa     Download sequence    Send to blast
MTSAAPDDRH RRSAEADTVS ESEAEHEMDT DDDGVEYEEI EEEVEVEEEV EEEVEVEEEV  60
EEEEEEEEEE EEIVAEELSV SPIGGDRNDV SQDMESKGQE EHLGLGSSDP EKSVANLSSD  120
NLVVEGGIGN PKSSGASEEI QKSESHIDID EPEYREMGRH VVAAEDGGFQ ESAGDMKDSV  180
AFPERGTPKD DDASNDIKVS PCDNGIVIAT KPLSVSGKEA KDTISIRDGF SEEANLVCLK  240
NESKKMGSQS REDINQEPTS FSRLAVPQIR PRSLSPVSEL KNGNKRPAVI CDFFAKGWCI  300
KGNSCRFLHI KDYANVNSQK SEDVAALDEK SELQADGGVR DGSERSRSSF SLERTTSKEH  360
GESPRRHQFL EKHKISSLQR DDLSHAVYQD SQQSPIYKDI ARHISSFKDV GGENLKQNWS  420
SDDHPTYRDS CFPGSPSLST TGIFPSQNIS SLTRSSLSFS SLDKDRLGAQ KFPGSVGEKL  480
ASGSTSWLRS SSPFSGSESG NLSLKNVSGD PLHIAESRTK ISSNDWEPSV PFRSSFLIAQ  540
NLSSPGSLYD PIRDSIEQPN FGDGFSKSSS RPETSTNTYL SIDSDPVLKR TLDPEFGLGK  600
QSSFSFGHHI FHDDMSDKNF QGKNLFTTEG ENVNNSHAEQ QSSLYKEEKV LSPSSLKDIP  660
IANKMHFDSG SSIELDVRRQ KKELKIDSGR QNNEMDVDLK KDGEQKESKA LRNFRAALVD  720
FVKELVKPFW REGQLSRDAH KIIVKKAVDK VLSTLQPHQI PSAEESIKQY LYASEPKISK  780
VVEGY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028074784.10.0protein FRIGIDA-ESSENTIAL 1 isoform X1
TrEMBLA0A2R6QA720.0A0A2R6QA72_ACTCH; Protein FRIGIDA-ESSENTIAL like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30042122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-25C3H family protein