PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn361971
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ARF
Protein Properties Length: 810aa    MW: 89378.1 Da    PI: 7.0384
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn361971genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.56.1e-24108209199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l
  Achn361971 108 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQL 202
                 99*****************************8544444..48************************************************..8899999 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +++++r+
  Achn361971 203 LLGIRRA 209
                 ****997 PP
2Auxin_resp1219.2e-40234317183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  Achn361971 234 AAHAAATNSRFTIFYNPRASPSEFVISLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 317
                 79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-4892237IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.7E-43100223IPR015300DNA-binding pseudobarrel domain
CDDcd100178.85E-22107208No hitNo description
PROSITE profilePS5086312.548108210IPR003340B3 DNA binding domain
PfamPF023623.3E-22108209IPR003340B3 DNA binding domain
SMARTSM010191.8E-24108210IPR003340B3 DNA binding domain
PfamPF065071.3E-34234317IPR010525Auxin response factor
SuperFamilySSF542776.15E-8669751No hitNo description
PfamPF023091.8E-7670761IPR033389AUX/IAA domain
PROSITE profilePS5174523.7676760IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 810 aa     Download sequence    Send to blast
MHVLVLLFLY LLLEAAWCIS LRVIVAASTH KEVDAHIPNY SSLPPQLICQ LHNVTMHKLK  60
ICLLQADVET DEVYAQMTLQ PLSAQEQKDA SFLPVDLGAH SKQPTNYFCK TLTASDTSTH  120
GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDNEWKF RHIFRGQPKR HLLTTGWSVF  180
VSAKRLVAGD SVLFIWNEKN QLLLGIRRAS RPQTVMPSSV LSSDSMHLGL LAAAAHAAAT  240
NSRFTIFYNP RASPSEFVIS LAKYVKAVYH TRVSVGMRFR MLFETEESSV RRYMGTITGI  300
SDLDPVRWPN SHWRSVKGIG VTPWMQPRID ASMLGMQSNI YQAMAAAALQ EMRAVDPSKQ  360
APLSLLQFQQ VQNVPGRPSG LMQPQMLQQS QPQAVFLQSV KDNQPQPQPQ PHLLQQQLQH  420
QNAFTSQHQQ LQLPLSQQQQ QHQPQLVDHQ QVSTVVSTPS PFASSSQAQS PSLQAIASMC  480
QQQSFSDSNG NTATNTIVSP LHSLMGSFSH DETSHLLNLP RSDALLSSTG WPPKRVAVDP  540
LLPSAASQCI LPQVEQLGPP HTNTSQNAIS LPPFPGRESS IDQDGSNDPH NHLLFGVSID  600
SSSLLMQNGM SSIRGVGSDS DSTTVHFTSS NSYLSSTGTT GTNFSLNPVM TPSSCIGESG  660
FLQSPENLGQ ANPPTRTFVK VYKSGSFGRL LDISKFSSYH ELRRVLARMF GLEGQLEDPL  720
RSGWQLVFVD QENDVLLLGD DPWQEFVNSV WCIKILSPEE VHQMGKQGLE LLNSVPIQRL  780
SNSNCDDYAS RQESRNLSSG IASVGSLDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1282532484385Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF8. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280959.10.0auxin response factor 6-like
SwissprotQ9ZTX81e-174ARFF_ARATH; Auxin response factor 6
TrEMBLA0A0B0PUT90.0A0A0B0PUT9_GOSAR; Auxin response factor
STRINGXP_009797608.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23682452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.21e-175auxin response factor 6
Publications ? help Back to Top
  1. Liu N, et al.
    Down-regulation of AUXIN RESPONSE FACTORS 6 and 8 by microRNA 167 leads to floral development defects and female sterility in tomato.
    J. Exp. Bot., 2014. 65(9): p. 2507-20
    [PMID:24723401]
  2. Oh E, et al.
    Cell elongation is regulated through a central circuit of interacting transcription factors in the Arabidopsis hypocotyl.
    Elife, 2015.
    [PMID:24867218]
  3. Minato N, et al.
    The phytoplasmal virulence factor TENGU causes plant sterility by downregulating of the jasmonic acid and auxin pathways.
    Sci Rep, 2014. 4: p. 7399
    [PMID:25492247]
  4. Ortega-Amaro MA, et al.
    Overexpression of AtGRDP2, a novel glycine-rich domain protein, accelerates plant growth and improves stress tolerance.
    Front Plant Sci, 2014. 5: p. 782
    [PMID:25653657]
  5. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  6. Batista VG,Pinheiro MP,Melo Filho PA,Santos RC,Lima LM
    Temporal and tissue expression of genes involved in buds of earliness cotton cultivar.
    Genet. Mol. Res., 2015. 14(3): p. 7386-94
    [PMID:26214417]
  7. Li P, et al.
    Ca(2+) -regulated and diurnal rhythm-regulated Na(+) /Ca(2+) exchanger AtNCL affects flowering time and auxin signalling in Arabidopsis.
    Plant Cell Environ., 2016. 39(2): p. 377-92
    [PMID:26296956]
  8. Barik S, et al.
    Coevolution Pattern and Functional Conservation or Divergence of miR167s and their targets across Diverse Plant Species.
    Sci Rep, 2015. 5: p. 14611
    [PMID:26459056]
  9. Luo S, et al.
    Constitutive Expression of OsIAA9 Affects Starch Granules Accumulation and Root Gravitropic Response in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 1156
    [PMID:26734051]
  10. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  11. Zhang GZ, et al.
    Ectopic expression of UGT84A2 delayed flowering by indole-3-butyric acid-mediated transcriptional repression of ARF6 and ARF8 genes in Arabidopsis.
    Plant Cell Rep., 2017. 36(12): p. 1995-2006
    [PMID:29027578]
  12. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]