PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn361801
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 390aa    MW: 44005 Da    PI: 7.0648
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn361801genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.3e-093153551055
                 HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 r+RR+ri +++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  Achn361801 315 RKRRERITERLRILQTLVPNG-----TKVDISTMLEEAVHYVKFLQ 355
                 9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.986305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-12310371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-10311367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-10311360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.43E-10314359No hitNo description
PfamPF000101.6E-6315355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MIFNLGTKLD FRIYFSTYLL LDKLIGLKEP KKAFSNFHKL KQYRSSTKSP YREMEAMGVF  60
LEEEWESLSG IFPTEEANFM AHLHSHDKRD NDSSFSLGTS TFWPINEANV NASGNVDESL  120
FYSSDSLTAN FHYFSQESSH SNCSNTVFFP TPSQENQYYT DSNHTQETNN TLQSMDFSAL  180
GSENNFSFPI LTDYAMEDKK ERRGSKLGNA AADPGTELQR KRMFNKNEDS SETPKKKSRV  240
LRNAKKDNKK NAGSQKSQKL TIHDDETKSS SCCNSEDESN GGEISDSKGS ATPHSNGKTR  300
ASRGVATDPQ SLYARKRRER ITERLRILQT LVPNGTKVDI STMLEEAVHY VKFLQLQIKL  360
LSSDEMWMYA PIAYNGMDMG ICGRISPAL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028055296.11e-122transcription factor bHLH85-like
TrEMBLA0A2R6QY701e-96A0A2R6QY70_ACTCH; Transcription factor bHLH84 like
STRINGEMJ252317e-89(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.18e-42bHLH family protein