PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn360501

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 734aa MW: 84619.6 Da PI: 7.0157

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn360501	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	26	3.1e-08	195	259	25	89
FAR1 25 ngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 ++++ +++ +egkr+++k++ + ++r+etr gC a ++vk + ++++ v +++ HnH + Achn360501 195 DDNFFNNNVPIEEEGKRRKDKRD-HMYTSHRPETRFGCLAWMNVKYCRpTEQFDVVEFNPVHNHIV 259 55555566666789999999999.89999*****************9*************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-4	204	259	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-31	382	476	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 734 aa Download sequence Send to blast
MATALSFASV TVNLHPHHHR VIFRPNPRIV VYKFRCSGDN PTSSTSTKSD SEPEKNVLLK 60 MAWYSSELLG IAASFFRSPS NVEASDRDLK LAVEASGAVD RALVVGTIKE DFERSYFVTG 120 NLTLNAYEEN CEFADPAGSF RGLRRFKRNC TNFGSLIEKS NMKLMKWEDF EVLDIDGNYA 180 RDDCDSRRKL EFKDDDNFFN NNVPIEEEGK RRKDKRDHMY TSHRPETRFG CLAWMNVKYC 240 RPTEQFDVVE FNPVHNHIVS TPSKTHLHKS HRKFGVAQAA IADMANDCGI APKATVAFMA 300 RQVGGRENLG FIPQDYKNYL RSKRTVQMKI GDTGGVLEYL QKMQLQDPNF FYAIQVDEDD 360 LITNIFWADA KMMADYAHFG DVVSFDTTYR KNKNGRPFAM FLGVNHHKQT VVFGAALLYA 420 EDADSFIWLF DTFAKAMGGK TPKTILTDQD SVMAKALATQ WPETIHRLCI WHIYQNAASK 480 LSGVFAIFQD FSKDFSKCIY DYEDEDEFIS AWNAMLERYN LQDNDWLKRM FNQKEKWALV 540 YGIQTFCADM TTTQRSESMN SLLKRYASYN NDLLQFFQHF QRLVDDRRYE ELKANFRATQ 600 STPFLSFPIE MLKHAARIYT PEVFNLFEKE LRKAHDCNFN RLGDNETITE YDVSPFGKDQ 660 HHLVTYDSST HMVSCSCLVK RENGIIKPIR YEDLGTRKIA FLTQNGHKLN DLNLQYQLKE 720 EPTDPSPPTK GPY*

Sequence ? help Back to Top

Protein Sequence Length: 734 aa Download sequence Send to blast

MATALSFASV TVNLHPHHHR VIFRPNPRIV VYKFRCSGDN PTSSTSTKSD SEPEKNVLLK  60
MAWYSSELLG IAASFFRSPS NVEASDRDLK LAVEASGAVD RALVVGTIKE DFERSYFVTG  120
NLTLNAYEEN CEFADPAGSF RGLRRFKRNC TNFGSLIEKS NMKLMKWEDF EVLDIDGNYA  180
RDDCDSRRKL EFKDDDNFFN NNVPIEEEGK RRKDKRDHMY TSHRPETRFG CLAWMNVKYC  240
RPTEQFDVVE FNPVHNHIVS TPSKTHLHKS HRKFGVAQAA IADMANDCGI APKATVAFMA  300
RQVGGRENLG FIPQDYKNYL RSKRTVQMKI GDTGGVLEYL QKMQLQDPNF FYAIQVDEDD  360
LITNIFWADA KMMADYAHFG DVVSFDTTYR KNKNGRPFAM FLGVNHHKQT VVFGAALLYA  420
EDADSFIWLF DTFAKAMGGK TPKTILTDQD SVMAKALATQ WPETIHRLCI WHIYQNAASK  480
LSGVFAIFQD FSKDFSKCIY DYEDEDEFIS AWNAMLERYN LQDNDWLKRM FNQKEKWALV  540
YGIQTFCADM TTTQRSESMN SLLKRYASYN NDLLQFFQHF QRLVDDRRYE ELKANFRATQ  600
STPFLSFPIE MLKHAARIYT PEVFNLFEKE LRKAHDCNFN RLGDNETITE YDVSPFGKDQ  660
HHLVTYDSST HMVSCSCLVK RENGIIKPIR YEDLGTRKIA FLTQNGHKLN DLNLQYQLKE  720
EPTDPSPPTK GPY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016652765.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2R6QX94	0.0	A0A2R6QX94_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRING	XP_008246048.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-101	FAR1-related sequence 5