PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn360501 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | FAR1 | ||||||||
Protein Properties | Length: 734aa MW: 84619.6 Da PI: 7.0157 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 26 | 3.1e-08 | 195 | 259 | 25 | 89 |
FAR1 25 ngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 ++++ +++ +egkr+++k++ + ++r+etr gC a ++vk + ++++ v +++ HnH + Achn360501 195 DDNFFNNNVPIEEEGKRRKDKRD-HMYTSHRPETRFGCLAWMNVKYCRpTEQFDVVEFNPVHNHIV 259 55555566666789999999999.89999*******************9***************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.5E-4 | 204 | 259 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.2E-31 | 382 | 476 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 734 aa Download sequence Send to blast |
MATALSFASV TVNLHPHHHR VIFRPNPRIV VYKFRCSGDN PTSSTSTKSD SEPEKNVLLK 60 MAWYSSELLG IAASFFRSPS NVEASDRDLK LAVEASGAVD RALVVGTIKE DFERSYFVTG 120 NLTLNAYEEN CEFADPAGSF RGLRRFKRNC TNFGSLIEKS NMKLMKWEDF EVLDIDGNYA 180 RDDCDSRRKL EFKDDDNFFN NNVPIEEEGK RRKDKRDHMY TSHRPETRFG CLAWMNVKYC 240 RPTEQFDVVE FNPVHNHIVS TPSKTHLHKS HRKFGVAQAA IADMANDCGI APKATVAFMA 300 RQVGGRENLG FIPQDYKNYL RSKRTVQMKI GDTGGVLEYL QKMQLQDPNF FYAIQVDEDD 360 LITNIFWADA KMMADYAHFG DVVSFDTTYR KNKNGRPFAM FLGVNHHKQT VVFGAALLYA 420 EDADSFIWLF DTFAKAMGGK TPKTILTDQD SVMAKALATQ WPETIHRLCI WHIYQNAASK 480 LSGVFAIFQD FSKDFSKCIY DYEDEDEFIS AWNAMLERYN LQDNDWLKRM FNQKEKWALV 540 YGIQTFCADM TTTQRSESMN SLLKRYASYN NDLLQFFQHF QRLVDDRRYE ELKANFRATQ 600 STPFLSFPIE MLKHAARIYT PEVFNLFEKE LRKAHDCNFN RLGDNETITE YDVSPFGKDQ 660 HHLVTYDSST HMVSCSCLVK RENGIIKPIR YEDLGTRKIA FLTQNGHKLN DLNLQYQLKE 720 EPTDPSPPTK GPY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016652765.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2R6QX94 | 0.0 | A0A2R6QX94_ACTCH; Protein FAR1-RELATED SEQUENCE like | ||||
STRING | XP_008246048.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA435 | 22 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-101 | FAR1-related sequence 5 |