PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Achn359751 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 259aa MW: 29269.8 Da PI: 6.1622 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 137.2 | 1.1e-42 | 10 | 131 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 lppGfrF P+deelv++yL kk+++++ v+k +d+++++ ++L k +++ewyfFs rd+kyatg r+nrat+sgyWkatgkd+++++ +++ Achn359751 10 LPPGFRFYPSDEELVCHYLYKKIANEQ-----VLKGTDLVEIDLHTLA---KPNSNEWYFFSFRDRKYATGYRANRATTSGYWKATGKDRTIHDPrTRA 100 79**********************998.....5789999999999996...44679**************************************95566 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 g +ktLvfy++rap+g kt W+mhe+rle Achn359751 101 IAGKRKTLVFYRNRAPNGIKTGWIMHEFRLE 131 689*************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.62E-51 | 8 | 149 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.63 | 10 | 149 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-26 | 11 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 259 aa Download sequence Send to blast |
MGLRDIGASL PPGFRFYPSD EELVCHYLYK KIANEQVLKG TDLVEIDLHT LAKPNSNEWY 60 FFSFRDRKYA TGYRANRATT SGYWKATGKD RTIHDPRTRA IAGKRKTLVF YRNRAPNGIK 120 TGWIMHEFRL ENPHVTPKED WVLCRVFHKS NGSKNSPPNV LDSVTDQTMI TSFSQTPPHQ 180 NQNPNDSTIQ NPSALSPNLL QLSRDIINDA SIDEVNSKCD DEYGFLFDLG FEESCLGGGV 240 PQNLEEMICD DDGSLVFL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 5e-41 | 9 | 155 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-41 | 9 | 155 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-41 | 9 | 155 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-41 | 9 | 155 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-41 | 9 | 155 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-41 | 9 | 155 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-41 | 9 | 155 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-41 | 9 | 155 | 19 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028111304.1 | 1e-131 | NAC domain-containing protein 21/22-like | ||||
Swissprot | Q9FLJ2 | 3e-51 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A2R6PPA4 | 0.0 | A0A2R6PPA4_ACTCH; Protein CUP-SHAPED COTYLEDON 3 like | ||||
STRING | EOX94424 | 1e-119 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1882 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G28530.1 | 2e-80 | NAC domain containing protein 74 |
Publications ? help Back to Top | |||
---|---|---|---|
|