PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn359611
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family LBD
Protein Properties Length: 720aa    MW: 80761 Da    PI: 9.3223
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn359611genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.12.9e-385236241101
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkCa+dCv+apyf++eq p++fa++hk+FGasnv+kll ++p  +r +a+ +++yeA+ar+rdPvyG+v++i++lqqq+++l+a+l ++k
  Achn359611 523 PCGACKFLRRKCAADCVFAPYFCSEQgPAQFAAIHKVFGASNVSKLLLHVPVPDRCEAVVTIAYEAQARMRDPVYGCVAHIFALQQQVACLQAQLMQVK 621
                 7*************************99*******************************************************************9999 PP

      DUF260  99 eel 101
                 ++l
  Achn359611 622 AQL 624
                 875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006412.852158IPR001510Zinc finger, PARP-type
SuperFamilySSF577161.57E-6162No hitNo description
Gene3DG3DSA:3.30.1740.105.9E-8163IPR001510Zinc finger, PARP-type
SuperFamilySSF577162.85E-1866149No hitNo description
Gene3DG3DSA:3.30.1740.104.5E-2166153IPR001510Zinc finger, PARP-type
PROSITE profilePS5006416.00170142IPR001510Zinc finger, PARP-type
SMARTSM013364.8E-2073147IPR001510Zinc finger, PARP-type
PfamPF006451.0E-1573143IPR001510Zinc finger, PARP-type
SuperFamilySSF1429212.75E-6277324IPR008893WGR domain
Gene3DG3DSA:1.20.142.107.4E-24323454IPR004102Poly(ADP-ribose) polymerase, regulatory domain
PROSITE profilePS5106018.536344472IPR004102Poly(ADP-ribose) polymerase, regulatory domain
SuperFamilySSF475873.66E-19345454IPR004102Poly(ADP-ribose) polymerase, regulatory domain
PfamPF028778.3E-22345454IPR004102Poly(ADP-ribose) polymerase, regulatory domain
PfamPF006445.0E-10452516IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563991.34E-9452516No hitNo description
Gene3DG3DSA:3.90.228.101.7E-12455516IPR012317Poly(ADP-ribose) polymerase, catalytic domain
PROSITE profilePS5089122.649522624IPR004883Lateral organ boundaries, LOB
PfamPF031959.7E-37523621IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006471Biological Processprotein ADP-ribosylation
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MWNHADCTLK KGNQIKAHVL PFYDHNLDWQ RSLDDVEGIE LLRWEDQEKI RKYVESGGPQ  60
NTPSAAVMEY GMEVSQTSRA TCRRCNQMIM KGEVRISTKP DGRGGKGLAW HHANCFMELF  120
PNTQVEKVSG WNNLSASDQA AVLALTQKLS NMRTKNLYTN WHRKWFKSQK AKKPSRTLPQ  180
PSNMPPGNQA ANEQHQSSNS KKLGDLKVSI IGLPKESMSI IKLSLEHRGF AIVSLSVISM  240
KRREGDMQDE WKSQIEGAGG QFHTKIKKDT NCLVVSGVLN DKNAEMKAAS YYILQIIHED  300
KGSCYVFRKW SQVGNEKIGG IKLAEMDYGV NKEVSKKKNL NGAGSLLAPP LKELIKMLFN  360
VEAYRICFRY IKFCRSAIME FEINMSEMPL GKLSKSSIQR GFEALTEIQN LVTSNVHDPS  420
YKESLIIDAS NRFFTVIPSI HPHVIRDEDD LKSKYMDKPP KGKHSTKGLG MKIPQKSEHA  480
KWRDEVVVPC GKPVASNIKA SELMFNEYIV YNTTQMAAGA GSPCGACKFL RRKCAADCVF  540
APYFCSEQGP AQFAAIHKVF GASNVSKLLL HVPVPDRCEA VVTIAYEAQA RMRDPVYGCV  600
AHIFALQQQV ACLQAQLMQV KAQLAQNLVD TRQVENPIWP GNMVGMPNFP AYANPTYMSL  660
SSISPQSSLE SIDRGNVDGM GVQERERREE FCFQICTKKR PSQTDLGELQ ALALRMMRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-345196247111LOB family transfactor Ramosa2.1
5ly0_B2e-345196247111LOB family transfactor Ramosa2.1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00309DAPTransfer from AT2G42430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A371HJR61e-122A0A371HJR6_MUCPR; Poly [ADP-ribose] polymerase (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.12e-50lateral organ boundaries-domain 16