PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn359461
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 297aa    MW: 31436.6 Da    PI: 6.2571
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn359461genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.7e-10145189554
                 HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                 h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  Achn359461 145 HSIAERVRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 189
                 99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-15138199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.094140189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-15142199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-7145189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-11146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MANNPSDGPT DDFFEQILGF PSYGAAETNL AGTDASFAGA SAPMMLQLSS GDGSAHLGGV  60
GGGGGFVFPL GLSLDQGKPG FMKVDEASGN SKRFCEGFVD GRASSSAVKN AFSGQPMPST  120
VAAVPHPPAI RPRVRARRGQ ATDPHSIAER VRRERIAERI RALQELVPSV NKTDRAAMLD  180
EIVDYVKFLR LQVKVLSMSR LGGAGAVAPL VTDIPISSLE QEANEGGKHQ AAWEKWSNDG  240
TERKVAELME ENVGAAMQLL QSKELCIMPI SLASAIYRSQ PPDPTMAIKP ETHHPS*
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028081479.11e-157transcription factor UNE12-like
SwissprotO227681e-116UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A2R6PP380.0A0A2R6PP38_ACTCH; Transcription factor like
STRINGVIT_07s0141g00220.t011e-145(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57992434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.23e-92bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]