PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn359401
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HSF
Protein Properties Length: 378aa    MW: 43483.1 Da    PI: 5.7836
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn359401genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.22.2e-32581492102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k++++++d+  ++++sw++ g+sfvv+d++ f+ ++Lp++Fkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g+++ll++++
    Achn359401  58 FLTKTFDMVDDPISNHIVSWNRGGHSFVVWDPHGFSISLLPRFFKHNNFSSFVRQLNTYGFRKIDPDK---------WEFANEGFVRGHRHLLRNVR 145
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
    Achn359401 146 RRKA 149
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.0E-3652141IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.03E-3254147IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.3E-5654147IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-185881IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.6E-2958147IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-1896108IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434097121IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-18109121IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MTPYLRGSTT PLLPRGVPEH SEVVKQEYMG PSSSQSGHPT PPPPQPMEGL HDVGPPPFLT  60
KTFDMVDDPI SNHIVSWNRG GHSFVVWDPH GFSISLLPRF FKHNNFSSFV RQLNTYGFRK  120
IDPDKWEFAN EGFVRGHRHL LRNVRRRKAP TQPLLSEQAL GPCVEVGQFG LDGEMERLRR  180
DKQVLMMELV MLRQQQQKTR AHLQAMELRL QGTERKQQQM MRFLARAMQN PSFLQHLVQQ  240
KEKRKEIKEA ISKKRRRPID QGVLSTVGGE SSRLNLSPIK VENVEFEDLY GFQVSELEIL  300
AMEMQGYGRA RKEQDEEEEH EQLEPFESGD RELDEGFWEE LLSERLDEES GLPAEEVEEE  360
DVNVLANQLD HLGSSPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-215614718120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242256KRKEIKEAISKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015891434.11e-180heat stress transcription factor A-7a-like
RefseqXP_015891435.11e-180heat stress transcription factor A-7a-like
RefseqXP_024932846.11e-180heat stress transcription factor A-7a-like
RefseqXP_024933008.11e-180heat stress transcription factor A-7a-like isoform X2
SwissprotQ9LUH81e-125HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A2R6PPC10.0A0A2R6PPC1_ACTCH; Heat stress transcription factor A-6b like
STRINGXP_006479647.11e-168(Citrus sinensis)
STRINGXP_006443978.11e-168(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-115heat shock transcription factor A6B