PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn359291
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 523aa    MW: 58631.7 Da    PI: 9.092
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn359291genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00038435457123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp+C k+F++   L  H rtH
  Achn359291 435 HECPICFKVFPSGQALGGHKRTH 457
                 79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.0556794IPR007087Zinc finger, C2H2
SMARTSM003550.0576789IPR015880Zinc finger, C2H2-like
PfamPF139123.6E-66991IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.616361388IPR007087Zinc finger, C2H2
PfamPF139128.5E-12361385IPR007087Zinc finger, C2H2
SuperFamilySSF576679.61E-8361383No hitNo description
SMARTSM003550.056361383IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280363383IPR007087Zinc finger, C2H2
SuperFamilySSF576679.61E-8430457No hitNo description
PfamPF139122.0E-11435457IPR007087Zinc finger, C2H2
PROSITE profilePS501579.203435457IPR007087Zinc finger, C2H2
SMARTSM003550.058435457IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280437457IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MNSSHDESSK LTKKKLLSIK HALIKAKPDT TVFEAGANAG AYGLRENPKK TPKFAGSNNE  60
YALLHDKMCR ECGKGFQSWK ALFGHMKCHS EKFSNSLEVE DSWSQSDNET AAPNRKKRSR  120
RVRRYLATTS SSLSMANNNH NNNNNNASSS VSENDQLEQE EVAMCLMMLS RDLCSHKFSV  180
DESSDNNFEL LEAGSSIWIN RVAKTEKFKK LRYGKLESAV LETHSQFDFS KQSEYKLKKS  240
KVGDGVRFRE SEVELGKNYW PHDCENVKFK KLKNGKLESA TLDYNSQFAS GFSINTSKSN  300
RFFGDDKSNK SRVEDESVFE ASEIELGKNL VKENVLAEAD QFSSKKKSIC SNLESGSKSK  360
FECTTCNKTF HSYQALGGHR ASHKKTKGCF ATKTDSNENS IETKTKPLQN ESRPIDKEKS  420
KKTFCASKKP NKDSHECPIC FKVFPSGQAL GGHKRTHLVG GSEAKSNQSV VIIQKPIPET  480
RDFLDLNLPA PTEEVSNIEF KPWWVGIETN VEHEPVFGLI SN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028112256.11e-139zinc finger protein ZAT1-like
TrEMBLA0A2R6PCN10.0A0A2R6PCN1_ACTCH; Zinc finger protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44812241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.14e-30C2H2-like zinc finger protein