PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn358711
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HSF
Protein Properties Length: 299aa    MW: 33227 Da    PI: 5.3101
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn358711genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.61.3e-35261172102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k++++++d++++++isw+++g++fvv++++efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF ++ F+kg+k+ll +i+
    Achn358711  26 FLTKTFQLVDDPSIDDVISWNDDGSTFVVWNPTEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFLNECFRKGEKRLLGDIQ 113
                   9*****************************************************************99.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
    Achn358711 114 RRKV 117
                   **86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.9E-3718109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.0E-5622115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.24E-3523115IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.7E-202649IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.1E-3126115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-206476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-207789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MAPPPGEQNG GESAAGQGPR SLPTPFLTKT FQLVDDPSID DVISWNDDGS TFVVWNPTEF  60
ARDLLPKYFK HNNFSSFVRQ LNTYGFRKVV PDRWEFLNEC FRKGEKRLLG DIQRRKVTTP  120
AAVVSTLPAP QGTGSPSNSG EEQVISSNTS PRETSFGSTT ELVDENERLK KENMQLNKEL  180
SQMKNLCNNI CALMSKYSGN RPESGSQAVK PLDLMPPKRT DNKADGKPED EARLFGISIG  240
AKRLREGEGE AAGQHEELQL QLGVGEVKSE PFDHRNVGDE EETPWLKQCN RTNQRLCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A9e-271811913123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028108220.11e-145heat stress transcription factor B-2a
SwissprotQ9SCW41e-94HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A2R6PM620.0A0A2R6PM62_ACTCH; Heat stress transcription factor B-2a like
STRINGEMJ199391e-123(Prunus persica)
STRINGXP_009803855.11e-123(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21822460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.12e-96heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]