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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn358591 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | MYB | ||||||||
Protein Properties | Length: 241aa MW: 27913.1 Da PI: 9.8225 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.9 | 5.7e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lvd+++++G tW++ ++ g+ R++k+c++rw +yl Achn358591 14 KGAWTPEEDQILVDYITKHGHATWHSLPKLAGLSRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 44.7 | 3.1e-14 | 67 | 166 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.....................................................-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.....................................................tWktIartmgkgRtlkqck 41 rg++T+eE+ +++++ +lG++ +W++Ia++++ gRt++++k Achn358591 67 RGPFTPEEENTIIQLHGMLGNKllqyylnemktvrefkfrlsvrqhqillffsgelffsfmgifhvvarinlkifRWAAIASKLP-GRTDNEVK 159 89***********************************************************************************.******** PP HHHHHHT CS Myb_DNA-binding 42 srwqkyl 48 ++w+++l Achn358591 160 NFWNSHL 166 ****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.66 | 9 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 3.2E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.6E-22 | 15 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.74E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS50090 | 8.142 | 62 | 166 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-21 | 65 | 87 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-10 | 66 | 168 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-7 | 139 | 166 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.66E-7 | 141 | 170 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-21 | 142 | 169 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.01E-6 | 142 | 166 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MGRAPCCEKE LVKKGAWTPE EDQILVDYIT KHGHATWHSL PKLAGLSRCG KSCRLRWTNY 60 LRPDIKRGPF TPEEENTIIQ LHGMLGNKLL QYYLNEMKTV REFKFRLSVR QHQILLFFSG 120 ELFFSFMGIF HVVARINLKI FRWAAIASKL PGRTDNEVKN FWNSHLKNRF FFLGHNLQAS 180 GPTSTSHMAQ WESARVEAEA RLSMDSFLNP SPTSKHDCDY FLRLWNSEVG ESFRKISELS 240 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-14 | 14 | 88 | 27 | 100 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018481450.1 | 1e-85 | PREDICTED: myb-related protein Zm38-like isoform X1 | ||||
TrEMBL | A0A346JM66 | 1e-114 | A0A346JM66_ACTDE; MYB13 protein | ||||
STRING | VIT_16s0050g00070.t01 | 7e-79 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61250.1 | 8e-74 | myb domain protein 17 |