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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn358581 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | MYB | ||||||||
Protein Properties | Length: 404aa MW: 46351.1 Da PI: 7.0356 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.5 | 1.7e-14 | 153 | 200 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W+++Ed++l +++ ++G g+W++++ g+ R +k+c++rw +yl Achn358581 153 KGLWSPDEDQRLRNYILRHGHGRWTSVPVNAGLQRNGKSCRLRWINYL 200 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.9 | 6.3e-15 | 206 | 251 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +T +E+e + ++ +lG++ W+ Ia++++ gRt++++k++w+++l Achn358581 206 RGMFTSQEEETVLTLHVMLGNK-WSQIAHHFP-GRTDNEIKNYWHSHL 251 789*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13869 | 1.1E-14 | 31 | 86 | IPR016706 | Cleavage/polyadenylation specificity factor subunit 5 |
Pfam | PF13869 | 6.1E-12 | 87 | 134 | IPR016706 | Cleavage/polyadenylation specificity factor subunit 5 |
PROSITE profile | PS51294 | 14.977 | 148 | 200 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-20 | 148 | 203 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.97E-28 | 151 | 247 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.8E-10 | 152 | 202 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.3E-13 | 153 | 200 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.50E-8 | 156 | 200 | No hit | No description |
PROSITE profile | PS51294 | 24.03 | 201 | 255 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-24 | 204 | 255 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-13 | 205 | 253 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-13 | 206 | 251 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.96E-9 | 209 | 251 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006378 | Biological Process | mRNA polyadenylation | ||||
GO:0005849 | Cellular Component | mRNA cleavage factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003729 | Molecular Function | mRNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MKEMGMMELI NDDRGDSLIG DNTRDQHYDR MVQEHNHPHI LLLQIGNTFC KLPGGRLKPG 60 ENEIEGLKRK LNSKLGANSP TLQPDWQECK KLYVVHLSER EYFAVPKNLK LLAVPLFELY 120 DNVQSSSSLT ISCLSGKMRC NKPVEKPKHK HHKGLWSPDE DQRLRNYILR HGHGRWTSVP 180 VNAGLQRNGK SCRLRWINYL RPGLKRGMFT SQEEETVLTL HVMLGNKWSQ IAHHFPGRTD 240 NEIKNYWHSH LKKKVAKTDQ TENTQSSLSS PNPSSIESFE HIEASSMNTN PESGHSHLPK 300 LLFAEWFSLD QFLGQDTRNR DSSVPGFVPS TQTFPKDPEF QDSCLESLLN ESSVSNGSVS 360 DHELFHIPDL KTEDWFQDHG FGNFVTQEDM YSHFHFNSDA MYM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2j8q_B | 3e-24 | 31 | 133 | 85 | 215 | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 5 |
3bho_A | 3e-24 | 31 | 133 | 66 | 196 | Cleavage and polyadenylation specificity factor subunit 5 |
3p5t_A | 3e-24 | 31 | 133 | 52 | 182 | Cleavage and polyadenylation specificity factor subunit 5 |
3p5t_B | 3e-24 | 31 | 133 | 52 | 182 | Cleavage and polyadenylation specificity factor subunit 5 |
3p5t_C | 3e-24 | 31 | 133 | 52 | 182 | Cleavage and polyadenylation specificity factor subunit 5 |
3p5t_D | 3e-24 | 31 | 133 | 52 | 182 | Cleavage and polyadenylation specificity factor subunit 5 |
3p5t_E | 3e-24 | 31 | 133 | 52 | 182 | Cleavage and polyadenylation specificity factor subunit 5 |
3p5t_F | 3e-24 | 31 | 133 | 52 | 182 | Cleavage and polyadenylation specificity factor subunit 5 |
3p6y_A | 3e-24 | 31 | 133 | 52 | 182 | Cleavage and polyadenylation specificity factor subunit 5 |
3p6y_B | 3e-24 | 31 | 133 | 52 | 182 | Cleavage and polyadenylation specificity factor subunit 5 |
3p6y_E | 3e-24 | 31 | 133 | 52 | 182 | Cleavage and polyadenylation specificity factor subunit 5 |
3p6y_F | 3e-24 | 31 | 133 | 52 | 182 | Cleavage and polyadenylation specificity factor subunit 5 |
3p6y_I | 3e-24 | 31 | 133 | 52 | 182 | Cleavage and polyadenylation specificity factor subunit 5 |
3p6y_J | 3e-24 | 31 | 133 | 52 | 182 | Cleavage and polyadenylation specificity factor subunit 5 |
3p6y_M | 3e-24 | 31 | 133 | 52 | 182 | Cleavage and polyadenylation specificity factor subunit 5 |
3p6y_N | 3e-24 | 31 | 133 | 52 | 182 | Cleavage and polyadenylation specificity factor subunit 5 |
3q2s_A | 3e-24 | 31 | 133 | 65 | 195 | Cleavage and polyadenylation specificity factor subunit 5 |
3q2s_B | 3e-24 | 31 | 133 | 65 | 195 | Cleavage and polyadenylation specificity factor subunit 5 |
3q2t_A | 3e-24 | 31 | 133 | 65 | 195 | Cleavage and polyadenylation specificity factor subunit 5 |
3q2t_B | 3e-24 | 31 | 133 | 65 | 195 | Cleavage and polyadenylation specificity factor subunit 5 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028061091.1 | 8e-92 | transcription factor LAF1-like | ||||
TrEMBL | A0A2R6PN01 | 0.0 | A0A2R6PN01_ACTCH; Transcription factor like | ||||
STRING | PGSC0003DMT400037080 | 2e-88 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25560.1 | 1e-54 | myb domain protein 18 |