PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn357141

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

bHLH

Protein Properties

Length: 327aa MW: 36585.5 Da PI: 5.9572

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn357141	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19	2.6e-06	223	262	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R +++ +++ L++l+ + +K + a++L +A+eYIk L Achn357141 223 KVRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 262 67889999*********98.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.036	213	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.6E-4	217	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-12	223	279	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.42E-7	223	266	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.5E-10	227	271	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MAEEFHLSSG NWWENLSRNR YVDAGSSQAE PNSQLMGLGL SSQAMDWNNT SLVRGGKVED 60 NFLHTGANFP QETTMESSQN QWREKMYSEN SSATRGFSLD QPQFTSAHIS SCESIVTTSF 120 QMDPATYGNS SIQGLLLGSD NQQQRPIIES RPMNYPYPPV NYNQFPQFLR SSSPPKLPSH 180 SQLQFSNNTP FWNATVANDD RSNFFLSSLQ GQFNPPAFDE KPKVRKEKMG DRITALQQLV 240 SPFGKTDTAS VLSEAIEYIK FLHQQVNVLS TPYMKSGASM QQQQNSDKKQ DLISRGLCLV 300 PVSSTFPVTH ENAVDFWTPT FGGTFR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002280367.3	1e-111	PREDICTED: transcription factor bHLH123 isoform X1
Swissprot	Q8GXT3	5e-55	BH123_ARATH; Transcription factor bHLH123
TrEMBL	A0A2R6PRJ2	0.0	A0A2R6PRJ2_ACTCH; Transcription factor bHLH123 like
STRING	VIT_19s0014g04670.t01	1e-111	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA860	24	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	3e-56	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]