PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn356871

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

GeBP

Protein Properties

Length: 358aa MW: 40011.5 Da PI: 5.2384

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn356871	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	119.5	1.7e-37	133	228	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 lfqrlwse+Dei +L+G++++++k+g++p d+d+f++f+kks+++ v+++ql KirrLKkK++++ k k+g + sfs++h+qk++e+skk+Wg Achn356871 133 LFQRLWSEDDEIEILKGVMEYRTKKGVDPGTDMDDFHDFIKKSLHVAVTRTQLYYKIRRLKKKYENNAGKGKNGVDRSFSNPHEQKAYEWSKKVWG 228 79*********************************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	3.1E-34	134	228	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MAPNRPTEAE AQGSSSSDEE VEGESSEENE SQSESEEEDK TSTPAPQTLS VPTKPDTESG 60 ESDSPDPSIK PVASKPMEDP SKSITKKPRS KSRSAVVEEE DKINHDSKRA KKKAVDSDEV 120 VEETVANDSK KQLFQRLWSE DDEIEILKGV MEYRTKKGVD PGTDMDDFHD FIKKSLHVAV 180 TRTQLYYKIR RLKKKYENNA GKGKNGVDRS FSNPHEQKAY EWSKKVWGEE DRGVGGDSVK 240 FNGKTKKNQN QNQNQNQRTI VVALPMIDRG KEGAKIEVAK TAAVSQSIGV KRSIGESSLE 300 EEIMKDGLEL IGGSKKLELE EKWKKLGEEE VELYVKRVDL IREQTKLVLE AMKLSGH*

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MAPNRPTEAE AQGSSSSDEE VEGESSEENE SQSESEEEDK TSTPAPQTLS VPTKPDTESG  60
ESDSPDPSIK PVASKPMEDP SKSITKKPRS KSRSAVVEEE DKINHDSKRA KKKAVDSDEV  120
VEETVANDSK KQLFQRLWSE DDEIEILKGV MEYRTKKGVD PGTDMDDFHD FIKKSLHVAV  180
TRTQLYYKIR RLKKKYENNA GKGKNGVDRS FSNPHEQKAY EWSKKVWGEE DRGVGGDSVK  240
FNGKTKKNQN QNQNQNQRTI VVALPMIDRG KEGAKIEVAK TAAVSQSIGV KRSIGESSLE  300
EEIMKDGLEL IGGSKKLELE EKWKKLGEEE VELYVKRVDL IREQTKLVLE AMKLSGH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028098167.1	1e-106	GLABROUS1 enhancer-binding protein-like
TrEMBL	A0A2R6QA12	0.0	A0A2R6QA12_ACTCH; Transcription factor
STRING	XP_006449140.1	3e-88	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3042	19	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G11510.1	3e-22	DNA-binding storekeeper protein-related transcriptional regulator