PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn355811
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 447aa    MW: 49296 Da    PI: 9.4194
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn355811genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.46.9e-3490146259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 dDgynWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers  +++v+ei+Y+g+Hnh+
  Achn355811  90 DDGYNWRKYGQKQVKGSEFPRSYYKCTHPKCPVKKKVERSL-EGQVTEIIYKGQHNHQ 146
                 8****************************************.***************8 PP
2WRKY103.41.2e-32264320359
                 -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 Dgy+WrKYGqK vkg+ +prsYY+Cts+gC+v+k+ver+a dpk+v++tYeg+Hnh+
  Achn355811 264 DGYRWRKYGQKLVKGNSYPRSYYKCTSQGCNVRKHVERAAGDPKAVITTYEGKHNHD 320
                 9*******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.1E-3081148IPR003657WRKY domain
PROSITE profilePS5081122.97484148IPR003657WRKY domain
SuperFamilySSF1182902.62E-2686148IPR003657WRKY domain
SMARTSM007742.5E-3789147IPR003657WRKY domain
PfamPF031069.1E-2690146IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.5E-36247322IPR003657WRKY domain
SuperFamilySSF1182909.55E-29254322IPR003657WRKY domain
PROSITE profilePS5081136.564257322IPR003657WRKY domain
SMARTSM007745.0E-38262321IPR003657WRKY domain
PfamPF031061.3E-25264320IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MSHQQALAQV TAQAAQAQSR MHNPAEFPSS LPAAPAASLP QPPSFTSNAT THQQMPPSMP  60
EPSIMTESSD LSHSDHRSQP SSFVADKPAD DGYNWRKYGQ KQVKGSEFPR SYYKCTHPKC  120
PVKKKVERSL EGQVTEIIYK GQHNHQPPPP SKRAKDAGNP NRNLNHHGNS DISMEGQTWN  180
LDKLREDGSA NSTSMKDQES SQVSSDSEEV GDTETGVDER DEYEPEAKRR NTQVRVSGPS  240
SSNRGVTEPR IIVQTTSEVD LLFDGYRWRK YGQKLVKGNS YPRSYYKCTS QGCNVRKHVE  300
RAAGDPKAVI TTYEGKHNHD VPAARNSSHN TTTTNNNLSQ SVANNAVSNK YTSVRNTVSA  360
ILLSNVLVDQ PIVKRLTIRL LLVAKSSGLP LRPFSKQSCH KFSEMAISSA VCFPLYITLS  420
LLSKVAVVYS MDCTIRGTSL MPPSYM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-3990323878Probable WRKY transcription factor 4
2lex_A5e-3990323878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028111113.10.0probable WRKY transcription factor 3 isoform X1
RefseqXP_028111114.10.0probable WRKY transcription factor 3 isoform X1
SwissprotQ9ZQ701e-128WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A2R6P3X80.0A0A2R6P3X8_ACTCH; WRKY transcription factor
STRINGXP_009794188.11e-165(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41072445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-112WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]