PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn355681 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | bHLH | ||||||||
Protein Properties | Length: 338aa MW: 37331.8 Da PI: 5.9223 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 20 | 1.3e-06 | 89 | 121 | 19 | 55 |
HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +f+ Lr+l+P++ ++K + a+ L +++eY+++Lq Achn355681 89 RFQMLRDLIPHS----DQKRDTASFLLEVIEYVQYLQ 121 699********9....8*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 4.5E-17 | 43 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 9.794 | 44 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.30E-9 | 46 | 124 | No hit | No description |
SuperFamily | SSF47459 | 1.27E-7 | 89 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MKPTKFHHEK EEDEETPPSN NKELCFINWD LIVEADGKND KASATRSKHS VTEQRRRSKI 60 NERTPVQDTE VVVFRGISWD ASGHVHLIRF QMLRDLIPHS DQKRDTASFL LEVIEYVQYL 120 QEKRNSHWQV QNFVGHPQAI KNGSGPGSTF PGRFDENNIT VSPTIHPNQQ NPIESDSSGD 180 PSGKMVDQLP ELVDKPIAMP MALQATVPAP IQGDAVLPHP LQRPISDAQS TECPIMSDSL 240 NQQEDLMIEG GTISVTSVYS QGLLNNLTQA LQSAGVDLSQ ATISVQIDLG KRANRGLTSG 300 IPVAKDPENT VPHQPIAHFR DVSNGDNVGQ VQKRLKI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00219 | DAP | Transfer from AT1G69010 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028122614.1 | 1e-142 | transcription factor BIM2-like isoform X2 | ||||
Swissprot | Q9CAA4 | 8e-81 | BIM2_ARATH; Transcription factor BIM2 | ||||
TrEMBL | A0A2R6P3Z9 | 0.0 | A0A2R6P3Z9_ACTCH; Transcription factor like | ||||
STRING | VIT_01s0010g00540.t01 | 1e-121 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4426 | 23 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 3e-83 | BES1-interacting Myc-like protein 2 |
Publications ? help Back to Top | |||
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