PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn354801
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 249aa    MW: 27377.9 Da    PI: 4.4631
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn354801genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.50.000131521971255
                 HHHHHHHHHHHHHCTSCCC.....TTS-STCHHHHHHHHHHHHHHH CS
         HLH  12 RRdriNsafeeLrellPkas..kapskKlsKaeiLekAveYIksLq 55 
                 RR++i++++  L++l+P +    ++ +   Ka +L + ++Y+ sLq
  Achn354801 152 RREKIRHRMKFLQDLVPGCNklLGNFQITGKAVMLDEIINYVLSLQ 197
                 9*****************7778888899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.594140196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-8151203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.56E-5152201No hitNo description
Gene3DG3DSA:4.10.280.106.4E-8153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDNGVDGELG YENRGHSLLD CLSLGNFIPL PSDEVLGVNS SFTGGWTPLD AVEYNAEFVT  60
SLISCHGLID NSYVDIQESL AELEPNMTCF GSETLSEMDS FFIEHRSRLI TNFGGSTDYP  120
LEGSGSKNEK ALLPQSSTHN YAQSQEDCKL VRREKIRHRM KFLQDLVPGC NKLLGNFQIT  180
GKAVMLDEII NYVLSLQRQV ELQGTACCLR PGPGETAAVT LNCPKFLSMK LATVYPETNA  240
EPEQILSR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028053572.14e-31transcription factor bHLH49-like isoform X3
RefseqXP_028053574.12e-31transcription factor bHLH49-like isoform X5
TrEMBLA0A2R6S1611e-103A0A2R6S161_ACTCH; Transcription factor bHLH74 like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.32e-22bHLH family protein