PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn354421

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Trihelix

Protein Properties

Length: 948aa MW: 106459 Da PI: 7.2785

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn354421	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	27.6	7.6e-09	168	253	2	81
trihelix 2 WtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 W+ +e l L +a r ++ +rgk ++ + +ev++++ ++g+ r +k+ kw+n+ ++++k+ e+e++++ e++ +y Achn354421 168 WKPSEMLWLARAWRvqyhggdAVDPPTSRGKTRADKDREVAEFLNRHGVGRDAKTAGTKWDNMLGEFRKVYEWERGGEREQV-GKSY 253 555555555555554444444566667789999******************************************9965555.3445 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00180	2.80E-11	804	935	No hit	No description
SuperFamily	SSF56112	3.42E-13	806	934	IPR011009	Protein kinase-like domain
Gene3D	G3DSA:1.10.510.10	2.2E-5	807	938	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 948 aa Download sequence Send to blast
MVDTKGDQTK KPQPQQSQHL SSSSSPKDPA EEFPETRQPR EHHHHQPSAT APFPSPTLYI 60 PIDPTPPPPP PQQQQFEAVN PKRPRYTSAQ WKPLPAPSQQ PQINIPSTES SPTTAGPHAQ 120 QPNPTTAGSS SETTSSPSPS LQDTTKPDGG DPYHHHQLRK GKYVSPVWKP SEMLWLARAW 180 RVQYHGGDAV DPPTSRGKTR ADKDREVAEF LNRHGVGRDA KTAGTKWDNM LGEFRKVYEW 240 ERGGEREQVG KSYFRLSPYE RKLHRLPASF DEEVFEELAQ FMGSRMRTPQ SRVAVITGEE 300 SRSPLAAAVK ALPPPPLSFR DDEMSPSGRA KQLVMTTGSG EPYLTRGSLQ GFESSSFDVP 360 TPSSSTSSKE FRRIGRVRMV WEESVSLWAE EGEHHRGRVK LEGSSFLKAD ELTFLDDSTV 420 ACTMEAFEDG PLKGFSVDRF VSGQQVKVFG RRKSSSVPAA SGSIERVQLP VSEPSIRSMA 480 SWEFQDPTEY YVGCLRVPPP SIPSLFELSW HLQEPPPEEL RFPLRKDVYR DLPQGKELFF 540 TTASEVLDCR GITFDLLSPI VRSNPSLTGR TASSRDSFIG LWDDCINRII SKFSSIEMVI 600 IRKPTLSSSE SLQDQWPNVT GFLRNFCLWR GEECDQLREG YLDPSSSIVE KLFWSFTDLP 660 YVLGYYAVGY IVTFCALSRS NDQIIRTDLY TLDLSTPGER MKALVPCWRI AGLLPLLADQ 720 CFHLANGNNY KLFPYSDFER YDTGNGNITE MTPNAVTRYF SSKRKWAAVK EIYDFLDCRI 780 PHAEVIVRSS EKEMSITFKP RGCKFKPCNC DHLVEALKHL TKSLVALHDL SFMHRDLCWE 840 KVRRSEKEGG EWFVAGFEEA VVAPQIYPHA AASGRHAPEM SRGLHGVKVD VWGVGHLVKT 900 CGLAAVPKML RELQNRCLDH NPEQRPTAAD CYHHLLQLQS ASAAGGY*

Sequence ? help Back to Top

Protein Sequence Length: 948 aa Download sequence Send to blast

MVDTKGDQTK KPQPQQSQHL SSSSSPKDPA EEFPETRQPR EHHHHQPSAT APFPSPTLYI  60
PIDPTPPPPP PQQQQFEAVN PKRPRYTSAQ WKPLPAPSQQ PQINIPSTES SPTTAGPHAQ  120
QPNPTTAGSS SETTSSPSPS LQDTTKPDGG DPYHHHQLRK GKYVSPVWKP SEMLWLARAW  180
RVQYHGGDAV DPPTSRGKTR ADKDREVAEF LNRHGVGRDA KTAGTKWDNM LGEFRKVYEW  240
ERGGEREQVG KSYFRLSPYE RKLHRLPASF DEEVFEELAQ FMGSRMRTPQ SRVAVITGEE  300
SRSPLAAAVK ALPPPPLSFR DDEMSPSGRA KQLVMTTGSG EPYLTRGSLQ GFESSSFDVP  360
TPSSSTSSKE FRRIGRVRMV WEESVSLWAE EGEHHRGRVK LEGSSFLKAD ELTFLDDSTV  420
ACTMEAFEDG PLKGFSVDRF VSGQQVKVFG RRKSSSVPAA SGSIERVQLP VSEPSIRSMA  480
SWEFQDPTEY YVGCLRVPPP SIPSLFELSW HLQEPPPEEL RFPLRKDVYR DLPQGKELFF  540
TTASEVLDCR GITFDLLSPI VRSNPSLTGR TASSRDSFIG LWDDCINRII SKFSSIEMVI  600
IRKPTLSSSE SLQDQWPNVT GFLRNFCLWR GEECDQLREG YLDPSSSIVE KLFWSFTDLP  660
YVLGYYAVGY IVTFCALSRS NDQIIRTDLY TLDLSTPGER MKALVPCWRI AGLLPLLADQ  720
CFHLANGNNY KLFPYSDFER YDTGNGNITE MTPNAVTRYF SSKRKWAAVK EIYDFLDCRI  780
PHAEVIVRSS EKEMSITFKP RGCKFKPCNC DHLVEALKHL TKSLVALHDL SFMHRDLCWE  840
KVRRSEKEGG EWFVAGFEEA VVAPQIYPHA AASGRHAPEM SRGLHGVKVD VWGVGHLVKT  900
CGLAAVPKML RELQNRCLDH NPEQRPTAAD CYHHLLQLQS ASAAGGY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010662347.1	0.0	PREDICTED: uncharacterized protein LOC100241288
Refseq	XP_028051889.1	0.0	uncharacterized protein LOC114256440
TrEMBL	A0A2R6RSZ6	0.0	A0A2R6RSZ6_ACTCH; Trihelix transcription factor
STRING	VIT_16s0022g02290.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12936	14	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	7e-07	Trihelix family protein