PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn354401 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | bHLH | ||||||||
Protein Properties | Length: 262aa MW: 29484.2 Da PI: 10.1218 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.1 | 1.6e-13 | 79 | 131 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 r++ h e+Er+RR+++ + ++ Lr+llP ++K s ++ +Av+YI++Lq Achn354401 79 RKVVHREIERKRRQEMGNLYASLRTLLPLeY---IKGKRSISDHMNEAVNYINHLQ 131 6889*************************77...*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.15E-15 | 75 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.54E-11 | 76 | 134 | No hit | No description |
PROSITE profile | PS50888 | 13.98 | 78 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.6E-11 | 79 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-10 | 79 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.8E-5 | 84 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MKILLSKCKM DRMHIVGACQ LRILGRRKQQ EIQQDPTDIG RAILESSNLT TNTIGKRKKK 60 SVGIDREDND GGTNGKKERK VVHREIERKR RQEMGNLYAS LRTLLPLEYI KGKRSISDHM 120 NEAVNYINHL QKNINELEIK REKLKKLPSS RDPLASTASG SSKICFPNSV TVSLCYGGVE 180 ILVTSEKGFA LSTVFRLLVD EGIDVVSYFS TEVNGRLFHT IRSEISDQMY VDLSRLQQKM 240 CGLMNGKLIE SPTNLPMPTM G* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 86 | 91 | ERKRRQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028077142.1 | 6e-76 | transcription factor bHLH118-like | ||||
TrEMBL | A0A2R6RSX1 | 1e-170 | A0A2R6RSX1_ACTCH; Transcription factor bHLH120 like | ||||
STRING | VIT_16s0022g02250.t01 | 4e-54 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA598 | 24 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25400.1 | 5e-34 | bHLH family protein |