PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn354401
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 262aa    MW: 29484.2 Da    PI: 10.1218
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn354401genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.6e-1379131155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 r++ h e+Er+RR+++ + ++ Lr+llP       ++K s ++   +Av+YI++Lq
  Achn354401  79 RKVVHREIERKRRQEMGNLYASLRTLLPLeY---IKGKRSISDHMNEAVNYINHLQ 131
                 6889*************************77...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.15E-1575145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.54E-1176134No hitNo description
PROSITE profilePS5088813.9878130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-1179131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1079146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-584136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MKILLSKCKM DRMHIVGACQ LRILGRRKQQ EIQQDPTDIG RAILESSNLT TNTIGKRKKK  60
SVGIDREDND GGTNGKKERK VVHREIERKR RQEMGNLYAS LRTLLPLEYI KGKRSISDHM  120
NEAVNYINHL QKNINELEIK REKLKKLPSS RDPLASTASG SSKICFPNSV TVSLCYGGVE  180
ILVTSEKGFA LSTVFRLLVD EGIDVVSYFS TEVNGRLFHT IRSEISDQMY VDLSRLQQKM  240
CGLMNGKLIE SPTNLPMPTM G*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18691ERKRRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028077142.16e-76transcription factor bHLH118-like
TrEMBLA0A2R6RSX11e-170A0A2R6RSX1_ACTCH; Transcription factor bHLH120 like
STRINGVIT_16s0022g02250.t014e-54(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59824109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25400.15e-34bHLH family protein