PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn351611 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | NAC | ||||||||
Protein Properties | Length: 269aa MW: 30504.3 Da PI: 8.3435 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 96.6 | 3.9e-30 | 45 | 121 | 53 | 128 |
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +e+ewyfF++rd+ky+++ r+nr++ sgyWkatg+dk++ls+ +g+ g+kk Lvf+kgr p+g+ktdW+mheyrl Achn351611 45 FGEEEWYFFTPRDRKYPNEVRPNRMAGSGYWKATGTDKPILSScDGKILGVKKALVFHKGRPPRGTKTDWIMHEYRL 121 3789**************************************989999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 33.568 | 1 | 147 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-14 | 37 | 121 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.57E-33 | 44 | 124 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MGDDNSVGAT GDKKIVVVVY KGRSPPKTRP AQARASPYAD VKALFGEEEW YFFTPRDRKY 60 PNEVRPNRMA GSGYWKATGT DKPILSSCDG KILGVKKALV FHKGRPPRGT KTDWIMHEYR 120 LPEATMLTSR QKRCMRKEDK LCSTNTNHNL EMIRDFLYRD CLVLPLIFAS QELPSLDMVS 180 RISSEASKIS TSLCEAFSDK DYSQHLVPPL DSFINWQKRK SGEENQYASL IQTKKKLTER 240 DDQGSDDNTE FDFCSTDQSE SNNFDASQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-37 | 42 | 125 | 68 | 149 | NAC domain-containing protein 19 |
3swm_B | 1e-37 | 42 | 125 | 68 | 149 | NAC domain-containing protein 19 |
3swm_C | 1e-37 | 42 | 125 | 68 | 149 | NAC domain-containing protein 19 |
3swm_D | 1e-37 | 42 | 125 | 68 | 149 | NAC domain-containing protein 19 |
3swp_A | 1e-37 | 42 | 125 | 68 | 149 | NAC domain-containing protein 19 |
3swp_B | 1e-37 | 42 | 125 | 68 | 149 | NAC domain-containing protein 19 |
3swp_C | 1e-37 | 42 | 125 | 68 | 149 | NAC domain-containing protein 19 |
3swp_D | 1e-37 | 42 | 125 | 68 | 149 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028086556.1 | 1e-107 | NAC domain-containing protein 1-like | ||||
Swissprot | K4BWV2 | 1e-42 | NAP1_SOLLC; NAC domain-containing protein 1 | ||||
TrEMBL | A0A438IPZ5 | 2e-67 | A0A438IPZ5_VITVI; NAC transcription factor 25 | ||||
TrEMBL | F6HR10 | 2e-67 | F6HR10_VITVI; Uncharacterized protein | ||||
STRING | VIT_08s0040g02110.t01 | 4e-68 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 2e-41 | NAC domain containing protein 25 |
Publications ? help Back to Top | |||
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