PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn351611

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NAC

Protein Properties

Length: 269aa MW: 30504.3 Da PI: 8.3435

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn351611	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	96.6	3.9e-30	45	121	53	128
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +e+ewyfF++rd+ky+++ r+nr++ sgyWkatg+dk++ls+ +g+ g+kk Lvf+kgr p+g+ktdW+mheyrl Achn351611 45 FGEEEWYFFTPRDRKYPNEVRPNRMAGSGYWKATGTDKPILSScDGKILGVKKALVFHKGRPPRGTKTDWIMHEYRL 121 3789************************************989999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	33.568	1	147	IPR003441	NAC domain
Pfam	PF02365	1.7E-14	37	121	IPR003441	NAC domain
SuperFamily	SSF101941	1.57E-33	44	124	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MGDDNSVGAT GDKKIVVVVY KGRSPPKTRP AQARASPYAD VKALFGEEEW YFFTPRDRKY 60 PNEVRPNRMA GSGYWKATGT DKPILSSCDG KILGVKKALV FHKGRPPRGT KTDWIMHEYR 120 LPEATMLTSR QKRCMRKEDK LCSTNTNHNL EMIRDFLYRD CLVLPLIFAS QELPSLDMVS 180 RISSEASKIS TSLCEAFSDK DYSQHLVPPL DSFINWQKRK SGEENQYASL IQTKKKLTER 240 DDQGSDDNTE FDFCSTDQSE SNNFDASQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-37	42	125	68	149	NAC domain-containing protein 19
3swm_B	1e-37	42	125	68	149	NAC domain-containing protein 19
3swm_C	1e-37	42	125	68	149	NAC domain-containing protein 19
3swm_D	1e-37	42	125	68	149	NAC domain-containing protein 19
3swp_A	1e-37	42	125	68	149	NAC domain-containing protein 19
3swp_B	1e-37	42	125	68	149	NAC domain-containing protein 19
3swp_C	1e-37	42	125	68	149	NAC domain-containing protein 19
3swp_D	1e-37	42	125	68	149	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269\|PubMed:29760199}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269\|PubMed:29760199}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028086556.1	1e-107	NAC domain-containing protein 1-like
Swissprot	K4BWV2	1e-42	NAP1_SOLLC; NAC domain-containing protein 1
TrEMBL	A0A438IPZ5	2e-67	A0A438IPZ5_VITVI; NAC transcription factor 25
TrEMBL	F6HR10	2e-67	F6HR10_VITVI; Uncharacterized protein
STRING	VIT_08s0040g02110.t01	4e-68	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	2e-41	NAC domain containing protein 25

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]