PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn351531
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ARF
Protein Properties Length: 533aa    MW: 59534.9 Da    PI: 7.5141
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn351531genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.23.6e-19771472799
                 ---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3  27 ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 + ++e++ tl  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF   + +++ l+++++r+
  Achn351531  77 MADSETDETLLAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL--RAENGDLCIGIRRA 147
                 3445567799***********************************************..4488889****996 PP
2Auxin_resp106.92.3e-35172255183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 a++ a+++ +FevvY+Prast+eF+vk++ v++al++++++G Rf+m fetedss +++ +Gt+++v+ +dpvrWp S+Wr+L+
  Achn351531 172 AVTLAANGHPFEVVYYPRASTPEFCVKASLVKAALQIRWCAGIRFRMPFETEDSSPISWfMGTISSVQVADPVRWPASPWRLLQ 255
                 678999****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010193.2E-866148IPR003340B3 DNA binding domain
PfamPF023624.2E-1776147IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.6E-2277148IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.02E-1782148IPR015300DNA-binding pseudobarrel domain
CDDcd100171.32E-1383146No hitNo description
PROSITE profilePS5086311.51985148IPR003340B3 DNA binding domain
PfamPF065074.7E-31172255IPR010525Auxin response factor
PROSITE profilePS5174517.015442522IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MITFIDSKDK IRETEKRLDS QLWHACAGSM VQMPPVSCKV FYFPQGHAEH ACGNVDFRNC  60
PRVPSYIACR VSAIKFMADS ETDETLLAKD VHGETWKFRH IYRGTPRRHL LTTGWSTFVN  120
HKKLVAGDSI VFLRAENGDL CIGIRRAKTG IGAGGGSSMG REKVKPESVI EAVTLAANGH  180
PFEVVYYPRA STPEFCVKAS LVKAALQIRW CAGIRFRMPF ETEDSSPISW FMGTISSVQV  240
ADPVRWPASP WRLLQVTWDE PNLLQNIKHV NPWLVELVSN VPSIHLSPFS PPRKKLRLPQ  300
HPDFPLDGQL PIPTFSCNLL GPTSPLSCLL DNAPAGMQGA RHAQYGLSLT DLHLNKLHSG  360
FENNSCLLSI GNSTDTPKKL DNGKRLQFVL FGQPILTEQQ INLSCSEDTI SPVGTGNKNY  420
SSCEGLQWYK ENQQETQSRM ETGHCKVFRD SEDVGRTLDL SALRSYEELY RKLANMFGVE  480
QTEMLNHVLY WDATDSIKQI GDEPFSDFMK TAKRLTILTD LSSNNIGMLS GD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-4474276187388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021817874.10.0auxin response factor 18-like isoform X4
RefseqXP_021817875.10.0auxin response factor 18-like isoform X5
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2R6PWM50.0A0A2R6PWM5_ACTCH; Auxin response factor
STRINGEOY078380.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-169auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]