PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn350721

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

CAMTA

Protein Properties

Length: 1138aa MW: 125647 Da PI: 5.4958

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn350721	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	167.9	1.6e-52	23	136	4	116
CG-1 4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101 e + rwlk+ e++ iL+++++ +lt +++ +p+sgsl+L+n++++r+frkDG++w+kkkdg+tv E+he+LKvg+ve+l+cyYah+e+np fqrr+yw+ Achn350721 23 EaQIRWLKPAEVLFILQTYKEDHLTDQPPIKPSSGSLFLFNKRVLRFFRKDGHCWRKKKDGRTVGEAHERLKVGNVEALNCYYAHGEQNPDFQRRSYWM 121 5489********************************************************************************************* PP CG-1 102 Leeelekivlvhyle 116 L+ + e+ivlvhy+e Achn350721 122 LDPASEHIVLVHYRE 136 ***********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	77.265	17	143	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	7.8E-73	20	138	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	5.0E-47	23	136	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	1.2E-8	576	666	IPR013783	Immunoglobulin-like fold
CDD	cd00102	7.01E-4	581	665	No hit	No description
Pfam	PF01833	1.4E-7	581	658	IPR002909	IPT domain
SuperFamily	SSF81296	5.88E-17	581	665	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:1.25.40.20	8.2E-15	778	873	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.3	779	871	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	2.49E-15	782	873	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	5.5E-8	798	872	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	6.56E-14	799	871	No hit	No description
PROSITE profile	PS50088	10.312	812	844	IPR002110	Ankyrin repeat
SMART	SM00248	0.0071	812	847	IPR002110	Ankyrin repeat
SMART	SM00248	2000	851	880	IPR002110	Ankyrin repeat
SMART	SM00015	23	929	951	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.169	930	959	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	5.58E-5	977	1036	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	150	988	1010	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.01	1011	1033	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.212	1013	1037	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	1.0E-4	1014	1033	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1138 aa Download sequence Send to blast
MKICITAISN PISGYNLPDI VREAQIRWLK PAEVLFILQT YKEDHLTDQP PIKPSSGSLF 60 LFNKRVLRFF RKDGHCWRKK KDGRTVGEAH ERLKVGNVEA LNCYYAHGEQ NPDFQRRSYW 120 MLDPASEHIV LVHYREISEG RHSPGSISKL SAGSPLTISQ SPSYTAQHPG SATAISELYD 180 QYQSPGSVEV SSDAVANSNG MDHLERIERK GESNGSSGLE FSQALRRLEE QLSLNDETLG 240 EIDSFCNGNE NSNDSESIIN GQSGCAPSVN DLSTLLLQRQ SGSPLTLSQS PSYTAQHPGS 300 ATAISELYDL YQSPGSVEVS SDAVANSNGM DHLERIERKG ESNGSSGLEF SQALRRLEEQ 360 LSLNDETLGE IDSFCNGNEN SNDSESIING QSGCAPSVDD LSTLLLQRQS GGNRKHNHQG 420 MAQQFTGEHK NSLPWKEMLD FSTGSPGAES EEKNVYTSSE KGTQLSYSRC DLLEEQETGH 480 WINFGTHDSR KCNDFPTPDS DANLQASPSI KYIQSSESHF TLPTSMFLSQ ELDFEFPAYS 540 PLTNTRHTDS DYFTTMFDKG QIGLHLEADS SLTIAQQQKF TIREISPDWG YASEATKVVI 600 VGSFLCDPSE GAWTCMFSDR EVPVQIIQEG VICCLAPPHL PGKVTLCITS GNQESCSEVR 660 EFDYRAQTGS CAHFSSSHKE KTKSPEELLA LVRFAQMLLS DPSVEKGDMT ESGLDQWGKF 720 KASEDLWNHV FMALLDGSWT SSSTTEWLLQ ELLKDKLQQW LSSRSQGGCD EQGCSLSKKE 780 QGVIHMVAGM DFEWALNPIL NSGVSINFRD INGWTALHWA AHFGREKMVA ALIASGASAW 840 AVTDPNSLDR TGKTPASVAA SSGHKGLAGY LSEVALTSHL SSLTLEGKEL SKGSPDAEAE 900 IDANNFLQRN IDTNEDQNSL KDTLSAVRNA AQAAARIQAA FRAHSFRRRT QKEDASAAAS 960 SANEYNILSN DIKGLSVASK LAFRNARDYN TAALSIQKKF RGWKGHKDFL AFRQKVVKIQ 1020 AHVRGHQVRK QYKVIWAVGI LEKVVLRWRR KGAGFRGFRQ EMESIDESED EDIIKVFRKQ 1080 KVEGAIDEAV SIVRSMVDSP DACQQYSRVL GRYRQAKAGL EGADSDVTST SQREMFG*

Sequence ? help Back to Top

Protein Sequence Length: 1138 aa Download sequence Send to blast

MKICITAISN PISGYNLPDI VREAQIRWLK PAEVLFILQT YKEDHLTDQP PIKPSSGSLF  60
LFNKRVLRFF RKDGHCWRKK KDGRTVGEAH ERLKVGNVEA LNCYYAHGEQ NPDFQRRSYW  120
MLDPASEHIV LVHYREISEG RHSPGSISKL SAGSPLTISQ SPSYTAQHPG SATAISELYD  180
QYQSPGSVEV SSDAVANSNG MDHLERIERK GESNGSSGLE FSQALRRLEE QLSLNDETLG  240
EIDSFCNGNE NSNDSESIIN GQSGCAPSVN DLSTLLLQRQ SGSPLTLSQS PSYTAQHPGS  300
ATAISELYDL YQSPGSVEVS SDAVANSNGM DHLERIERKG ESNGSSGLEF SQALRRLEEQ  360
LSLNDETLGE IDSFCNGNEN SNDSESIING QSGCAPSVDD LSTLLLQRQS GGNRKHNHQG  420
MAQQFTGEHK NSLPWKEMLD FSTGSPGAES EEKNVYTSSE KGTQLSYSRC DLLEEQETGH  480
WINFGTHDSR KCNDFPTPDS DANLQASPSI KYIQSSESHF TLPTSMFLSQ ELDFEFPAYS  540
PLTNTRHTDS DYFTTMFDKG QIGLHLEADS SLTIAQQQKF TIREISPDWG YASEATKVVI  600
VGSFLCDPSE GAWTCMFSDR EVPVQIIQEG VICCLAPPHL PGKVTLCITS GNQESCSEVR  660
EFDYRAQTGS CAHFSSSHKE KTKSPEELLA LVRFAQMLLS DPSVEKGDMT ESGLDQWGKF  720
KASEDLWNHV FMALLDGSWT SSSTTEWLLQ ELLKDKLQQW LSSRSQGGCD EQGCSLSKKE  780
QGVIHMVAGM DFEWALNPIL NSGVSINFRD INGWTALHWA AHFGREKMVA ALIASGASAW  840
AVTDPNSLDR TGKTPASVAA SSGHKGLAGY LSEVALTSHL SSLTLEGKEL SKGSPDAEAE  900
IDANNFLQRN IDTNEDQNSL KDTLSAVRNA AQAAARIQAA FRAHSFRRRT QKEDASAAAS  960
SANEYNILSN DIKGLSVASK LAFRNARDYN TAALSIQKKF RGWKGHKDFL AFRQKVVKIQ  1020
AHVRGHQVRK QYKVIWAVGI LEKVVLRWRR KGAGFRGFRQ EMESIDESED EDIIKVFRKQ  1080
KVEGAIDEAV SIVRSMVDSP DACQQYSRVL GRYRQAKAGL EGADSDVTST SQREMFG*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028093707.1	0.0	calmodulin-binding transcription activator 4-like
Refseq	XP_028093713.1	0.0	calmodulin-binding transcription activator 4-like
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A2R6QRE5	0.0	A0A2R6QRE5_ACTCH; Calmodulin-binding transcription activator like
STRING	VIT_01s0010g03850.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3932	20	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]