PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn350541

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Trihelix

Protein Properties

Length: 314aa MW: 34381.1 Da PI: 5.3437

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn350541	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85.3	7.7e-27	41	133	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rWt++e+l+Li ++r ++r+r g+ +++p+W++vs++++++g++r+p+qC+++w+nl+++yk+ike+e++ ++e++s +++ ++l+ Achn350541 41 RWTRHEILVLILGKRAADNRVRPGRasgsgqvQAEPKWASVSSYCKKHGVNRGPVQCRKRWSNLAGDYKRIKEWESQVRDEAESFWAMRNDLR 133 8*******************8766677888********************************************999999999999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.214	41	105	IPR017877	Myb-like domain
Pfam	PF13837	8.8E-13	41	129	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.5E-4	42	104	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MALEPLSIAL IPDDAVTNGG DGSPPAEDGG DDGVRAPRLP RWTRHEILVL ILGKRAADNR 60 VRPGRASGSG QVQAEPKWAS VSSYCKKHGV NRGPVQCRKR WSNLAGDYKR IKEWESQVRD 120 EAESFWAMRN DLRRERKLPG FFDREVYDML EGGTAAASAA ADTEAVFDSG RSAAAEGGLF 180 SDFEQTAREE EGSGPEKYFV PAEGGYTPAP VPVSGAIHRT ERTSNPEMGT GAISDEGRKR 240 KRLSADGDEE TNTTIQYQLM EVLERNSRML STQLEAQNNN FHLDREQRKD HVDSLVAVLD 300 KLAGALGRIA DKL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021887986.1	1e-137	trihelix transcription factor ASR3
Swissprot	Q8VZ20	1e-106	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	A0A2R6QRH9	0.0	A0A2R6QRH9_ACTCH; Trihelix transcription factor
STRING	evm.model.supercontig_2461.1	1e-137	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1786	24	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-107	Trihelix family protein

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]